Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 9e-11 >seq2 Length=4539804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| || ||||||||||| ||||| || || | |||||| |||||| Sbjct 3722424 GCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTT 3722483 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 ||||| || || || ||||| ||||| || ||||| || | || | |||||| ||| Sbjct 3722484 AAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAG 3722543 Query 94936 GGACTCCACCAAGAGTTTGC 94955 || || ||| || ||||| Sbjct 3722544 GGTCTTCACACCGACTTTGC 3722563 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 9691 TTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 ||||||| ||| |||||||| ||||| ||||| | || || || || | ||||| Sbjct 4317497 TTGCTTTACCAATTGCATCAATTTCATCTATGAAAATAATACAAGGAGCGTTCTTGCGAG 4317438 Query 9750 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 | |||| ||||| | ||| || | || |||||||||||||| || | ||| | Sbjct 4317437 CAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACACCAACAAACATTTCAAGAAACT 4317378 Query 9810 TTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9868 | | || ||| | | || ||||| |||| |||||| || ||||| || ||| Sbjct 4317377 CAGAACCTGACACACT-TAAAAAAGGGACGTTAGCTTCACCAGCGGTGGCTTTAGCAAGA 4317319 Query 9869 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| ||||| ||||| || ||| | || | |||||| || ||||| || || || Sbjct 4317318 AGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGCACCACGAGGAATTTTAGCCCC 4317260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260770836960