Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq2 87.8 2e-12 >seq1 Length=5579133 Score = 129 bits (142), Expect = 6e-25 Identities = 346/524 (66%), Gaps = 4/524 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 |||||| || | | ||||| |||||| | |||||||||||||| ||| | | || || Sbjct 4227796 CCTCAGCATATGATTATGCGTGTCGCCGTTGGTATCCACGGTGAGGACATTGAAGC-TGC 4227854 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||| || ||| | || ||| ||| |||||||| || || | ||||| || || Sbjct 4227855 TATTGAAACATACAATTTGATGTCTCAACGCTACTTTACCCATGCTTCACCAACTCTTTT 4227914 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || ||||| || || || | || || ||||| || ||||||| || || Sbjct 4227915 CAATGCCGGTACTCCTCGTCCCCAACTCTCTTCTTGTTTCCTCGTTACGATGAAAGACGA 4227974 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 ||| || || || |||||||| || |||||| |||||| ||||||||| | || Sbjct 4227975 CTCTATTGAAGGAATCTACGACACACTCAAGATGTGTGCTATGATCTCCAAGACCGCTGG 4228034 Query 53419 TGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||||| | | || ||| | | || | ||| | || || || | Sbjct 4228035 CGGTATTGGTAT-TAATATTCACAACATTAGAGCAACCGGTTCGTATATTGCTGGAACTA 4228093 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 | || || | ||||| || || ||| | || || | ||||||||| || || || | Sbjct 4228094 ATGGTACTTCCAACGGAATTGTCCCCATGATTCGTGTTTACAACAACACAGCTCGTTATG 4228153 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | |||| || ||| ||||| || | || || ||| | ||||| ||||| | Sbjct 4228154 TTGACCAAGGAGGTAATAAGCGTCCTGGTGCCTTTGCAGCCTATTTGGAGCCTTGGCATG 4228213 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| ||||||| ||| | || || || || ||| || |||| || | ||| | Sbjct 4228214 CCGATGTTATGGACTTTTTAGAACTTCGAAAGACTCATGGCAACGAGGATTTCCGCGCAC 4228273 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAA 53701 | || |||| || |||||||||| ||| | || |||||| Sbjct 4228274 GCGAAATGTTCTATGCCTTGTGGATTCCTGACTTGTTTATGCAA 4228317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC-ATGAG 55785 || ||||| ||||| || || ||||||||| || |||| | | |||||| ||| Sbjct 4229320 CTTAAGGATCTTTACAAAACCGTATGGGAGATTAGTCAAAAGACTGTTATTGACTATGC- 4229378 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| || ||||| | | ||| || || ||||| | ||||||| | || || |||| Sbjct 4229379 TGCCGACCGTGGCCCATTCATTGATCAATCCCAAAGTTTGAACATTCACTTGAAGGATCC 4229438 Query 55846 TTCACT--GGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 ||| || || || || || | ||||||||||| || ||||||||||| || ||||| Sbjct 4229439 TTC-CTACGGAAAAATTA--CTAGTATGCACTTTTATGGCTGGAAGAAGGGTCTTAAGAC 4229495 Query 55903 GGGTATGTACTATCTGCGGAC 55923 || ||||||||||| || || Sbjct 4229496 TGGAATGTACTATCTTCGTAC 4229516 >seq2 Length=4539804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 ||||||||||| ||||| | ||| ||||||||||||||||| ||||| | |||||| || Sbjct 3722530 ATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATA 3722471 Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGAC 74893 |||| || || ||| |||||||| ||||| ||| |||||||| || Sbjct 3722470 GAGGCA---AACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAAC 3722421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215972639200