Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 6e-25
seq2 87.8 2e-12
>seq1
Length=5579133
Score = 129 bits (142), Expect = 6e-25
Identities = 346/524 (66%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238
|||||| || | | ||||| |||||| | |||||||||||||| ||| | | || ||
Sbjct 4227796 CCTCAGCATATGATTATGCGTGTCGCCGTTGGTATCCACGGTGAGGACATTGAAGC-TGC 4227854
Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298
||| || ||| | || ||| ||| |||||||| || || | ||||| || ||
Sbjct 4227855 TATTGAAACATACAATTTGATGTCTCAACGCTACTTTACCCATGCTTCACCAACTCTTTT 4227914
Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358
||| || ||||| || || || | || || ||||| || ||||||| || ||
Sbjct 4227915 CAATGCCGGTACTCCTCGTCCCCAACTCTCTTCTTGTTTCCTCGTTACGATGAAAGACGA 4227974
Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418
||| || || || |||||||| || |||||| |||||| ||||||||| | ||
Sbjct 4227975 CTCTATTGAAGGAATCTACGACACACTCAAGATGTGTGCTATGATCTCCAAGACCGCTGG 4228034
Query 53419 TGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| ||||| | | || ||| | | || | ||| | || || || |
Sbjct 4228035 CGGTATTGGTAT-TAATATTCACAACATTAGAGCAACCGGTTCGTATATTGCTGGAACTA 4228093
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
| || || | ||||| || || ||| | || || | ||||||||| || || || |
Sbjct 4228094 ATGGTACTTCCAACGGAATTGTCCCCATGATTCGTGTTTACAACAACACAGCTCGTTATG 4228153
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
| |||| || ||| ||||| || | || || ||| | ||||| ||||| |
Sbjct 4228154 TTGACCAAGGAGGTAATAAGCGTCCTGGTGCCTTTGCAGCCTATTTGGAGCCTTGGCATG 4228213
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
|||| ||||||| ||| | || || || || ||| || |||| || | ||| |
Sbjct 4228214 CCGATGTTATGGACTTTTTAGAACTTCGAAAGACTCATGGCAACGAGGATTTCCGCGCAC 4228273
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAA 53701
| || |||| || |||||||||| ||| | || ||||||
Sbjct 4228274 GCGAAATGTTCTATGCCTTGTGGATTCCTGACTTGTTTATGCAA 4228317
Score = 91.5 bits (100), Expect = 2e-13
Identities = 145/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC-ATGAG 55785
|| ||||| ||||| || || ||||||||| || |||| | | |||||| |||
Sbjct 4229320 CTTAAGGATCTTTACAAAACCGTATGGGAGATTAGTCAAAAGACTGTTATTGACTATGC- 4229378
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| || ||||| | | ||| || || ||||| | ||||||| | || || ||||
Sbjct 4229379 TGCCGACCGTGGCCCATTCATTGATCAATCCCAAAGTTTGAACATTCACTTGAAGGATCC 4229438
Query 55846 TTCACT--GGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902
||| || || || || || | ||||||||||| || ||||||||||| || |||||
Sbjct 4229439 TTC-CTACGGAAAAATTA--CTAGTATGCACTTTTATGGCTGGAAGAAGGGTCTTAAGAC 4229495
Query 55903 GGGTATGTACTATCTGCGGAC 55923
|| ||||||||||| || ||
Sbjct 4229496 TGGAATGTACTATCTTCGTAC 4229516
>seq2
Length=4539804
Score = 87.8 bits (96), Expect = 2e-12
Identities = 88/113 (78%), Gaps = 6/113 (5%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842
||||||||||| ||||| | ||| ||||||||||||||||| ||||| | |||||| ||
Sbjct 3722530 ATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATA 3722471
Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGAC 74893
|||| || || ||| |||||||| ||||| ||| |||||||| ||
Sbjct 3722470 GAGGCA---AACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAAC 3722421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215972639200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |