Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq2 161 1e-34 >seq1 Length=5579133 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || ||||| ||||| ||||||||||| || | Sbjct 3238362 ATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCT 3238303 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| ||||| || || ||||| ||||||||||| || || Sbjct 3238302 GACACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAA 3238243 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| |||||||||||||| | ||||| | | || ||||| Sbjct 3238242 CAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTATAAC 3238183 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||| || || ||||||||||| ||||| Sbjct 3238182 ATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3238136 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||||| Sbjct 3108881 AATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTC 3108822 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | ||| ||||| || ||||| || ||||||||||| || || Sbjct 3108821 TGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCA 3108762 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| ||||||||||| | || |||| ||||| | | || || || Sbjct 3108761 ACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAA 3108702 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||||||||| || || ||||||||||| ||||| Sbjct 3108701 CATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3108654 Score = 172 bits (190), Expect = 6e-38 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || || ||||| || || |||||||| | ||||| |||||||| || |||||||| ||| Sbjct 3969003 ACAATCATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAG 3969062 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || ||| | |||| ||| | ||| ||||| || |||||||| ||||||||||| Sbjct 3969063 TCCTCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCT 3969122 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||| || ||||| || || ||||| |||||| | ||||||| ||||| || | ||| Sbjct 3969123 GACCAACAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGAC 3969182 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | |||||||| || || |||||| |||| | |||||||| ||||| Sbjct 3969183 TACAACATTCAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCGTGGTGG 3969235 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || || ||||| || || ||||| || || | Sbjct 2794724 ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCT 2794665 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| ||| |||||||||||||| ||||||||||| || || Sbjct 2794664 GACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 2794605 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||| || ||||| | ||||||| |||||| || | || || ||| Sbjct 2794604 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAAT 2794545 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || ||||||||||| | || | |||||||| ||||| Sbjct 2794544 ATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 2794498 >seq2 Length=4539804 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || || ||||||||||| | || ||||| || Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| || |||||||| ||||| || |||||||| || || Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||||||||| || |||| ||||| || |||| || || Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || |||||||| || || | |||||||| || || Sbjct 1045386 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGG 1045340 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || || ||||| | || |||||||| | Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || |||||||| ||||| || |||||||| || || Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||||||||| || |||| ||||| || |||| || || Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || |||||||| || || | |||||||| || || Sbjct 1044474 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGG 1044428 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || || ||||| | || |||||||| | Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || |||||||| ||||| || |||||||| || || Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||||||||| || |||| ||||| || |||| || || Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||| ||||| || | |||||||| || || Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGG 1045112 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || || ||||| | || |||||||| | Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || |||||||| ||||| || |||||||| || || Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||||||||| || || | ||||| || |||| || || Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||| ||||| || | |||||||| || || Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGG 1044656 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || || ||||| | || |||||||| | Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || |||||||| ||||| || |||||||| || || Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||||||||||||||| || || | ||||| || |||| || || Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || |||||||| || || | |||||||| || || Sbjct 1044930 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGG 1044884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 212/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||| ||||| || ||||||||||| || || |||||||| ||||| Sbjct 3722424 GCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTT 3722483 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || || || || || ||||| ||||| | ||||| || || |||| | ||| || ||| Sbjct 3722484 AAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAG 3722543 Query 64846 GGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCA--TCAC 64903 || || ||| || ||||| | |||| || || | ||| ||| |||| | | Sbjct 3722544 GGTCTTCACACCGACTTTGCCTGTTTGATGTTTAGTCATTTGAAGCACAGACCAGGCCGC 3722603 Query 64904 ATGGGACTATAATTGA-TATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACT 64962 | || | || | ||| || || ||||| || ||||| || |||| | | || Sbjct 3722604 AAGGTTGTTGAAGCCATTATTGTTGAA---GCTGTTGATATTGAGAAAGAATACTTCACG 3722660 Query 64963 GCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAA 65022 | ||| ||||| | |||| | || ||| || ||| |||| |||||||| ||| Sbjct 3722661 GACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTGATGTGTCAGTATATTGAA 3722720 Query 65023 TTTGTAGCAGATCG 65036 ||||| || ||||| Sbjct 3722721 TTTGTTGCTGATCG 3722734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310371484480