Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 6e-17
>seq1
Length=5579133
Score = 102 bits (112), Expect = 6e-17
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| |||||||| || ||| | ||||| ||| ||| || | || || ||| |
Sbjct 2794727 AAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCC 2794668
Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| | | ||||| ||||| || || ||||| ||||| |||| |
Sbjct 2794667 TCTGACACTATTGACAAT--GTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTG 2794610
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| || |||||||||||||| || ||||| || | || | | || ||||
Sbjct 2794609 ATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATT 2794550
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| |||||||||||| |||| | || |||||| | ||| | ||||| ||
Sbjct 2794549 ACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 2794498
Score = 102 bits (112), Expect = 6e-17
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|||||||||||||| || ||||| ||||| || || ||||| |||| || || |
Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824
Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| | | | ||| ||||| ||||| ||||||||||| |||| |
Sbjct 3108823 TCTGACACTATTGATAAT--GTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTG 3108766
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| | ||||| || || || || || || || | ||| | ||||| ||||
Sbjct 3108765 ATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATT 3108706
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||| ||| |||| | || | ||||||||| | ||||| ||
Sbjct 3108705 ACAACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3108654
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| ||||| || || ||||| |||| || ||| | |
Sbjct 3238362 ATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCT 3238303
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | ||||| ||||| ||||| || || ||||| |||| || |
Sbjct 3238302 GACACTATTGACAAT--GTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATC 3238245
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| || || ||||| || || ||| | || |||| ||| | ||||| ||||| |
Sbjct 3238244 AACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTATA 3238185
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||| |||| | || | ||||||||| | ||||| ||
Sbjct 3238184 ACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3238136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355862382651708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |