Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 >seq1 Length=5579133 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| || ||| | ||||| ||| ||| || | || || ||| | Sbjct 2794727 AAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCC 2794668 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| ||||| || || ||||| ||||| |||| | Sbjct 2794667 TCTGACACTATTGACAAT--GTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTG 2794610 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||||||||| || ||||| || | || | | || |||| Sbjct 2794609 ATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATT 2794550 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||||||| |||| | || |||||| | ||| | ||||| || Sbjct 2794549 ACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 2794498 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||||||||| || ||||| ||||| || || ||||| |||| || || | Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | | ||| ||||| ||||| ||||||||||| |||| | Sbjct 3108823 TCTGACACTATTGATAAT--GTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTG 3108766 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | ||||| || || || || || || || | ||| | ||||| |||| Sbjct 3108765 ATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATT 3108706 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||| | || | ||||||||| | ||||| || Sbjct 3108705 ACAACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3108654 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| ||||| || || ||||| |||| || ||| | | Sbjct 3238362 ATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCT 3238303 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| ||||| || || ||||| |||| || | Sbjct 3238302 GACACTATTGACAAT--GTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATC 3238245 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| || || ||| | || |||| ||| | ||||| ||||| | Sbjct 3238244 AACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTATA 3238185 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||| | || | ||||||||| | ||||| || Sbjct 3238184 ACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3238136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862382651708