Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 179 9e-40 seq2 167 5e-36 >seq1 Length=5579133 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || ||||||||||||||||| ||||||||||||||||| | | || Sbjct 3238141 ACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGT 3238200 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| || || || |||||||| || ||||| | |||||||| |||||||||| ||| Sbjct 3238201 ACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCC 3238260 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || ||||| || || || || || || ||||||||| ||||||||| || Sbjct 3238261 TTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAG 3238320 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || |||||||| | |||||| Sbjct 3238321 GGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||||||||||||||||||||| || ||||| | ||| || Sbjct 2794503 ACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 2794562 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || || || || | |||||||| |||||||||| ||| Sbjct 2794563 ACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCC 2794622 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || || || || || ||||||||| ||| ||||| || Sbjct 2794623 TTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAG 2794682 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || | |||||| ||||| | |||||| || Sbjct 2794683 GGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || ||||||||||||||||| ||||||||||| ||||| | | || Sbjct 3108659 ACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGT 3108718 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| | |||||| || ||||| ||||| |||||||| |||||||||| ||| Sbjct 3108719 ACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCC 3108778 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || || || || || || ||||||||| || ||||| || Sbjct 3108779 TTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAG 3108838 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || || || || | |||||||| Sbjct 3108839 GGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||| ||||| ||||| || || | ||| || Sbjct 3969230 ACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGT 3969171 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || | ||||| || ||||||||||| ||||||||||||||||||| ||| Sbjct 3969170 ACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCC 3969111 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || || || || || || ||||||||| || ||||| || Sbjct 3969110 TTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAG 3969051 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | |||||| || || | |||||| Sbjct 3969050 GGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 >seq2 Length=4539804 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| ||||| ||||| ||||| ||||| | ||| || Sbjct 1045345 ACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGT 1045404 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| || ||||| || || || ||||| |||||||| |||||||||| || Sbjct 1045405 ACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCC 1045464 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || || || || ||||| || || |||||| || | Sbjct 1045465 TTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAA 1045524 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | ||||| || || | |||||| Sbjct 1045525 TGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| ||||| ||||| ||||| ||||| | ||| || Sbjct 1044433 ACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGT 1044492 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| || ||||| || || || ||||| |||||||| |||||||||| || Sbjct 1044493 ACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCC 1044552 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || ||||| || ||||||||||| ||||| || | Sbjct 1044553 TTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAA 1044612 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || ||||| | ||||| Sbjct 1044613 TGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| ||||| ||||| ||||| ||||| | ||| || Sbjct 1044889 ACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGT 1044948 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||| || ||||| || || || ||||| |||||||| |||||||||| || Sbjct 1044949 ACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCC 1045008 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || ||||| || ||||||||||| ||||| || | Sbjct 1045009 TTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAA 1045068 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || ||||| | ||||| Sbjct 1045069 TGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| ||||| ||||| ||||| ||||| | ||| || Sbjct 1045117 ACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGT 1045176 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| || ||||| || || || ||||| |||||||| |||||||||| || Sbjct 1045177 ACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCC 1045236 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || ||||| || ||||||||||| ||||| || | Sbjct 1045237 TTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAA 1045296 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || ||||| | ||||| Sbjct 1045297 TGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| ||||| ||||| ||||| ||||| | ||| || Sbjct 1044661 ACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGT 1044720 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||| || ||||| || || || ||||| |||||||| |||||||||| || Sbjct 1044721 ACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCC 1044780 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| || ||||| || ||||||||||| ||||| || | Sbjct 1044781 TTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAA 1044840 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | || || ||||| | ||||| Sbjct 1044841 TGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151940593460