Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 3e-40
>seq1
Length=5579133
Score = 181 bits (200), Expect = 3e-40
Identities = 175/225 (78%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||| |||||||| || ||||||| |||||||| | ||||||
Sbjct 3108659 ACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGT 3108718
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||||| |||||| |||||||| ||||| |||||||| || || ||||| ||
Sbjct 3108719 ACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCC 3108778
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| ||||||||||| || ||| ||| || || ||||| |||| ||||| || |
Sbjct 3108779 TTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAG 3108838
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| |||||||| ||||| | ||||| | ||| | |||||||||
Sbjct 3108839 GGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||||| |||||||||| ||||||||| | | |||
Sbjct 2794503 ACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 2794562
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | |||||| || || || || | ||||||||| || || ||||| ||
Sbjct 2794563 ACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCC 2794622
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| || ||||| ||| ||| || || ||||| |||| |||||| ||||
Sbjct 2794623 TTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAG 2794682
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || || || || |||||||| || | || | ||||| ||
Sbjct 2794683 GGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | || || || || || ||||| | ||||| || | | |||
Sbjct 3969230 ACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGT 3969171
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| |||| ||||| |||||||||||||| ||||||||||| || ||||| ||
Sbjct 3969170 ACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCC 3969111
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||| || ||| ||| || || ||||| |||| ||||| || |
Sbjct 3969110 TTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAG 3969051
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || |||||||| || | ||| | |||||
Sbjct 3969050 GGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009
Score = 109 bits (120), Expect = 1e-18
Identities = 87/105 (83%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| |||||||||||||| ||||| || || || |||||||| || ||||||||
Sbjct 5258355 GAAAATTTGGCCATCAGTAATAGAAATAACGTTAGTGGGAATATAAGCTGAGACATCACC 5258296
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| ||||||| ||| |||||||| |||| || ||||||||
Sbjct 5258295 ACCTTGAGTTTCGATAACGGGTAAGGCGGTTAAAGAACCACCACC 5258251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192531138882776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |