Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 196 4e-45 >seq2 Length=4539804 Score = 196 bits (216), Expect = 4e-45 Identities = 573/873 (66%), Gaps = 15/873 (2%) Strand=Plus/Minus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 ||||||| || || ||| |||||| |||||||| ||||| ||| |||| || ||||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||| || ||||| ||| |||| || | || ||| | ||| || | || Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACA 3722737 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 | || ||||| |||||||| |||||||| | ||| | || || || |||| | | Sbjct 3722736 AACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGAC 3722677 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 | || || || |||| || || | |||| || ||| || ||||| || || Sbjct 3722676 TAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGG 3722617 Query 4498 CTTTTATTTTATCTTTAGA--TGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 ||| | | ||| | |||| | | || | | ||||| ||||| ||||| Sbjct 3722616 CTTCAACA--ACCTTGCGGCCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAA 3722559 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 || || | ||| || || | | ||||| ||| || ||||| || | || ||||| Sbjct 3722558 GTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCAT 3722499 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | || ||||||||||| |||| |||||| || ||||||||||| || ||||| Sbjct 3722498 AAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTC 3722439 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAATCCA 4732 ||| || ||||| || || || | || | | || ||| ||| || |||||||| Sbjct 3722438 TACAGCAGCAAAGGCAACCAAAC--GAATTGCA-TAGGTGGAATCTTCATCATTAATCCA 3722382 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT-TAAATA 4791 | ||||| || ||||| ||||| | ||||| | ||||| | |||| Sbjct 3722381 ACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATG 3722322 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | ||||| | | || || |||| || || || | | || || | |||| Sbjct 3722321 ACGCTGTTTTTCCTTA-GGTTCACGAATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAG 3722263 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || |||||||| || ||| || || || |||| || | |||||| | | |||| Sbjct 3722262 AGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAA 3722203 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| | || | || | | || || || || ||||| || || || ||| Sbjct 3722202 CTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAAT 3722143 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGT--TTTTTCCAGTGGG 5028 | || | ||| || |||||||| |||| |||| |||| | || | ||| | Sbjct 3722142 AGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAA 3722083 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 ||| ||||| | | ||||| ||| ||| |||||||||| || ||||| || || |||| Sbjct 3722082 CCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGT 3722023 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGGAA 5121 | | |||||| || |||||| ||| |||| Sbjct 3722022 AGAATTGCCAAATTTCGTGATACTTAATTGGAA 3721990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049579181332