Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 390 2e-103
seq2 210 3e-49
>seq1
Length=5579133
Score = 390 bits (432), Expect = 2e-103
Identities = 1410/2186 (65%), Gaps = 21/2186 (1%)
Strand=Plus/Minus
Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871
||||| ||||||||||| ||||| || |||||| |||| || || || ||||| ||
Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457
Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931
|| | ||| || |||||| | ||||| |||| || |||||| |||
Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397
Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991
|| | || | || || || | |||| ||||||||| ||| ||||| | |||
Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337
Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATT---TTGAATGGAACCACCATCT 77048
||| ||| | || | || | |||| | | | | ||| ||||| ||| ||
Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277
Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108
| || | | ||||| || || ||||||||||| | | ||| | | | | |
Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217
Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168
|| ||||| || ||||| ||||| ||||| | || | || ||| || |||
Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157
Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228
|||||||| || | | | |||||| || | ||||||| || |||||||| |||||
Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097
Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 77288
||||| || || ||| ||| | | || ||| | || || || || | | |
Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037
Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348
|||||||||||||| | || ||| | ||| | || || |||| ||| || |
Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGGAT 4228977
Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408
||| ||||| | ||| | ||||| | || ||| | || | || ||| ||
Sbjct 4228976 GCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGCC 4228917
Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAAT 77467
|| | ||| ||| |||||||||||||| || | | || || | |||| || |
Sbjct 4228916 TCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTG-GCACCTGC 4228858
Query 77468 ACTATCAAACGGATAATGTAAAA-GAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526
| || || || || | | | ||| |||| |||| || | || ||||| || | ||
Sbjct 4228857 AGATTCGAATGGTAAACGAAGAGCGAAGAAAG-CATCGGCAAGACCTTGAACACCCAAAC 4228799
Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586
||| || | ||| | | ||||| | |||||| |||| ||||||||| |||| ||
Sbjct 4228798 CAACGGGACGATGGCGCATATTGCTACGGCGAGCTTCAGGAACAGGATAATAGTTAACGT 4228739
Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646
| ||||| || ||||| || | | ||| || || || || || | || || | ||||
Sbjct 4228738 CGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTTGGAAAT 4228679
Query 77647 CAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTA 77706
| |||| ||| ||| ||| || |||||| | || || || |||||||| || |
Sbjct 4228678 TGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCAA 4228619
Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766
| || | || | |||| | ||||| ||||| || || || ||||| |
Sbjct 4228618 CTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTAC 4228559
Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCC 77826
| | ||| | || ||| ||| |||||||| |||||||| | || || ||| | |
Sbjct 4228558 CAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTAC 4228499
Query 77827 CGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-TCATAGAT 77885
| ||||||| ||||||| | ||| | | ||| || | ||| || | | ||
Sbjct 4228498 CAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATGAACGAC 4228439
Query 77886 TTGTATCGCCTCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAA 77943
| || |||| | ||||| || ||| | || |||| || || |||||||
Sbjct 4228438 GACCA-CGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAA--CAAACTCGTCACCCCAAA 4228382
Query 77944 CATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-A 78002
|||| |||| || || ||||| ||||| | || | ||| | | | | | || |
Sbjct 4228381 CATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGT-TACGTTCA 4228323
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
|| |||| |||||| | ||||| ||||| | ||| || | | || ||| || | |
Sbjct 4228322 ACACGTTGCATAAACAAGTCAGGAATCCACAAGGCA-TAGA-ACATTTCGCGTGCGCGGA 4228265
Query 78063 --TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
|| || || || | ||||| ||| || | ||| ||||||| ||| | |||||| |
Sbjct 4228264 AATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAG 4228205
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGG 78180
| || | ||| ||| | | ||||| || ||||||||||| || || | ||| | |
Sbjct 4228204 GCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAG 4228145
Query 78181 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240
| ||||| || ||||| | | ||| || | ||| ||||| || || ||||| |||||||
Sbjct 4228144 CTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAG 4228085
Query 78241 AAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCT 78300
|||||| || |||| | ||| || ||| || || || || || || |||
Sbjct 4228084 CAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCT 4228025
Query 78301 TAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA 78360
| || || | ||| || || | ||| |||||||| || || ||| ||| || |||
Sbjct 4228024 TGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCA 4227965
Query 78361 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCG 78420
| ||| || ||||| ||| | ||| || || ||| || ||||| || | || |
Sbjct 4227964 TCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTG 4227905
Query 78421 GAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA 78480
| || ||||| ||||| | || ||| | | |||||||||||||||||| | ||| |
Sbjct 4227904 GTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAA 4227845
Query 78481 TGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACC 78539
||||| || | || || || || || |||||||| | |||||||||||| | ||| |
Sbjct 4227844 TGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCA 4227786
Query 78540 GTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 78599
|| | || ||| || || || || ||||| || || ||||| | |||
Sbjct 4227785 ACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTG 4227726
Query 78600 TATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACA 78659
|| | || || | ||||| || ||| || || || || || |||| ||| | ||
Sbjct 4227725 TAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTCATTACG 4227666
Query 78660 ATATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAG 78719
||||| || | || || || || | | | |||| ||||| ||||||
Sbjct 4227665 ATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTTACATAG 4227606
Query 78720 TTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGAT 78779
| | | | || | ||| ||| | || | |||| ||| || | || ||
Sbjct 4227605 TCATGAAGCTGTTGAACGACAGTTGAAAACACCTTCTCGGTTTGCTTATGCAAGTTGGAA 4227546
Query 78780 ACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCT 78839
||||| ||||| ||||| | |||||||||||||||||| | |||||| ||| || ||
Sbjct 4227545 ACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAGTCGCGGCA 4227486
Query 78840 ATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATA 78899
|||| || |||||| |||| || || ||||| || || || ||| | || |||
Sbjct 4227485 GTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACACCAGAAATG 4227426
Query 78900 ACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTT 78959
||||| | ||||| ||| ||||| ||| || | | | |||||||| | |
Sbjct 4227425 ACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAACAAAGCCTC 4227366
Query 78960 CTAATACGAGATGTGATTTTATCAAA 78985
|| ||||| |||||||| |||||
Sbjct 4227365 GAAACACGAGCAGTGATTTTGTCAAA 4227340
>seq2
Length=4539804
Score = 210 bits (232), Expect = 3e-49
Identities = 564/859 (66%), Gaps = 10/859 (1%)
Strand=Plus/Minus
Query 47871 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTA 47930
|| || || ||||| ||||| ||| | || || ||||| ||||| ||||| || |||||
Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTG 3722777
Query 47931 ACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 47990
| | ||||| || | | || || | | || | ||| ||||| |||||
Sbjct 3722776 GTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCA 3722717
Query 47991 ATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTA 48050
||||| ||||| || |||||| || | || |||| || ||||| |||||
Sbjct 3722716 ATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTG 3722657
Query 48051 AGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC--CGTTTCCTCAC 48108
| | |||| || ||| ||||| || || || || | | || | || | |
Sbjct 3722656 AAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAACCTTGCGGCC- 3722598
Query 48109 TTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCAT 48168
|||| | | |||||| ||||||| ||||| ||||| || |||||||| ||||
Sbjct 3722597 -TGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCAT 3722539
Query 48169 CTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCC 48228
| | || ||| ||||| || ||||| || ||||| ||||| ||||||||||| || ||||
Sbjct 3722538 CACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCC 3722479
Query 48229 AAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAA 48288
|||| || | || || |||||||||||||| || |||||||| || ||||| || |
Sbjct 3722478 AAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCA 3722419
Query 48289 GTCTCTCTCCGTAACTGG---CTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCT 48345
| | | || ||| |||| | | ||||| || | ||||| | || ||
Sbjct 3722418 AACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGG 3722359
Query 48346 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTT 48405
||| | | || ||||||| ||||||| || || | |||||| || ||
Sbjct 3722358 CCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCAC 3722299
Query 48406 TAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCT 48465
|| ||| ||||| | ||||| || | || ||||||||||||||||| || |
Sbjct 3722298 GAATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTT 3722239
Query 48466 GAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCA 48525
| || || |||| ||| | ||||| | |||||| || || | | || || || |
Sbjct 3722238 GGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAA 3722179
Query 48526 AATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAAT 48585
||||||||| || || ||||| ||||| ||| | || | |||| |||||| |
Sbjct 3722178 GATTCTCATTAACAATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGT 3722119
Query 48586 ATTTTTCGTTGGAAGT---CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642
| ||| | | | | | |||| ||| ||| | ||||| || | ||| | ||
Sbjct 3722118 AACGTTCATCAGCATTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTT 3722059
Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702
| ||||| |||||||| ||||| || || || || || | | ||| || || || |
Sbjct 3722058 CCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACT 3721999
Query 48703 GGATTGGGAAAATAACAAA 48721
||||| || | ||||||
Sbjct 3721998 TAATTGGAAACAAAACAAA 3721980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668765266560
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