Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-22 seq2 104 5e-17 >seq1 Length=5579133 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || |||||||| ||||| ||||||||||||||||| | ||||| | ||||||||| Sbjct 3108672 ACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCT 3108731 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || ||||| ||||| | || || || | | |||||||| || ||||| Sbjct 3108732 AACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGG 3108791 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| |||||| | || | |||| || ||| || ||||| ||||| || || Sbjct 3108792 ATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTA 3108851 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || ||||| | |||||||| Sbjct 3108852 CCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | |||||| |||||||| ||||| |||||||| || | | ||| | ||||| Sbjct 3969221 GAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATC 3969162 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 |||| ||||| || ||||||||||| | || ||||| | | ||||||||||| Sbjct 3969161 CTCTAATTGCTTT--CCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 3969104 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| ||||| |||||| | || | |||| || ||| || ||||| || ||| Sbjct 3969103 TCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATA 3969044 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | |||||| ||||| | |||||| Sbjct 3969043 GTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || |||||||| ||||| ||||||||||| ||||| | ||||| | || || || Sbjct 3238154 ACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCG 3238213 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| | | || || || | | ||||||||||| ||||| Sbjct 3238214 AGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGG 3238273 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| |||||| | || | |||| || || || ||||| ||||| || || Sbjct 3238274 ATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTA 3238333 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || |||| |||||| Sbjct 3238334 CCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| |||||||||||||| |||||||| | | ||| | ||||| || | Sbjct 2794518 CAAG-TGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCA 2794576 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||| || || | | || || || | | ||||||||||| || || Sbjct 2794577 ACTGCTTT--CCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | |||| || || || || || || |||||||| Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || | |||||| || || | |||||| || Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 >seq2 Length=4539804 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||| ||||| ||||||||||| | | ||| | |||||| Sbjct 1045355 AGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCT 1045414 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||| | || || || | | || |||||||| || Sbjct 1045415 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1045474 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | || ||| || ||||| | |||||||| Sbjct 1045475 TGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTC 1045534 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | |||||| Sbjct 1045535 TTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||| ||||| ||||||||||| | | ||| | |||||| Sbjct 1044443 AGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCT 1044502 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||| | || || || | | || |||||||| || Sbjct 1044503 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1044562 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | |||| ||| ||| ||||| | ||||| ||| Sbjct 1044563 TGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044622 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || || || | ||||| Sbjct 1044623 TTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| ||||| ||||||||||| | | ||| | |||||| Sbjct 1045127 AGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCT 1045186 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||| | || || || | | || |||||||| || Sbjct 1045187 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1045246 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | |||| ||| ||| ||||| | ||||| ||| Sbjct 1045247 TGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045306 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || || || | ||||| Sbjct 1045307 TTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| ||||| ||||||||||| | | ||| | || ||| Sbjct 1044671 AGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCT 1044730 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||| | || || || | | || |||||||| || Sbjct 1044731 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1044790 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | |||| ||| ||| ||||| | ||||| ||| Sbjct 1044791 TGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044850 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || || || | ||||| Sbjct 1044851 TTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||| ||||| ||||||||||| | | ||| | || ||| Sbjct 1044899 AGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCT 1044958 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || ||||| | || || || | | || |||||||| || Sbjct 1044959 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1045018 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | |||| ||| ||| ||||| | ||||| ||| Sbjct 1045019 TGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045078 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || || || | ||||| Sbjct 1045079 TTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820740866684