Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 2e-40
seq3 118 2e-21
>seq1
Length=5579133
Score = 181 bits (200), Expect = 2e-40
Identities = 179/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || | ||| | || || ||||| |||||||||||||
Sbjct 3969236 ACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 3969177
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||||| ||| || || || ||||| | ||||||||||||| ||
Sbjct 3969176 AAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGG 3969117
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| || |||||||||||||| |||||| || || | || |||||||| || | || |
Sbjct 3969116 AATTCCTTCCTTGTCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCA 3969058
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 3969057 CCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009
Score = 159 bits (176), Expect = 7e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||| ||||||||||| ||||| ||||
Sbjct 2794497 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGA 2794556
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| | || || |||||||| ||||| |||||||| ||| ||
Sbjct 2794557 AAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGG 2794616
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| || ||||| || || | || |||||||| || | ||| ||
Sbjct 2794617 AATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCAC 2794676
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || || || ||||| ||||||||||| || || |||||||| ||
Sbjct 2794677 CTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727
Score = 149 bits (164), Expect = 1e-30
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | || || || | ||| || ||||||||||| || ||||
Sbjct 3238135 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGA 3238194
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || || || ||||| ||||| || || |||||||||||||||||||| ||| ||
Sbjct 3238195 CAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGG 3238254
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| || ||||| |||||||| |||||| || || | || |||||||| || | ||| |
Sbjct 3238255 AATTCCTTCCTTATCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAA 3238313
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || || ||||||||||| | || || || || ||||||||
Sbjct 3238314 CCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Score = 141 bits (156), Expect = 2e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | || || || | ||| || |||||||||||||| ||||
Sbjct 3108653 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 3108712
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || || ||||| |||| || || || || || || | ||||||||| ||| ||
Sbjct 3108713 CAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| || || ||||||||||| |||||| || || |||| |||||||| || | || |
Sbjct 3108773 AATTCCTTCTTTGTCTTGGAT-TTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCA 3108831
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
| || || || |||||||||||||| | || || ||||| || ||||||||
Sbjct 3108832 CCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883
>seq3
Length=2452883
Score = 118 bits (130), Expect = 2e-21
Identities = 179/255 (70%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 316947 AATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGC 317006
|||||| || ||| || |||| | ||| || |||||| || |||||||| || |
Sbjct 1687207 AATGAAATCGACGGAAGGAGTGTCGGCTTCAGACTCGTCGATATCGTGCTCAACGTAGAC 1687148
Query 317007 AGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCAT 317066
|| ||| | || ||||| ||||| | |||||||| ||||| || | |||
Sbjct 1687147 GGTACGGAGATGA------GTAGGGAAACCTTCAACTTGACCGTTGACAATGGCACGCAT 1687094
Query 317067 CAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAG 317126
|| || ||||| || | ||| || || |||||||||||||| ||| || ||| ||
Sbjct 1687093 AAGGGTAGACTTACCGGAACCGTTAGGACCGCAAAGACCATAACGACGACCACGCTTAAG 1687034
Query 317127 ATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATC 317186
| | ||| || ||| ||||||||||| ||||||| || |||||||||||||| |
Sbjct 1687033 ACGGAGACGAGTACGGTTAAGAAGAATCTTGGCACCATAAGCAAGAGAGAACTCACAGTT 1686974
Query 317187 ACACAGGTCCTCGCC 317201
|| || ||||| ||
Sbjct 1686973 GCAAAGATCCTCACC 1686959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739146354616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |