Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq3 118 2e-21 >seq1 Length=5579133 Score = 181 bits (200), Expect = 2e-40 Identities = 179/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || | ||| | || || ||||| ||||||||||||| Sbjct 3969236 ACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 3969177 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||||| ||| || || || ||||| | ||||||||||||| || Sbjct 3969176 AAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGG 3969117 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||||||||| |||||| || || | || |||||||| || | || | Sbjct 3969116 AATTCCTTCCTTGTCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCA 3969058 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 3969057 CCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| ||||||||||| ||||| |||| Sbjct 2794497 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGA 2794556 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| | || || |||||||| ||||| |||||||| ||| || Sbjct 2794557 AAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGG 2794616 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| || || | || |||||||| || | ||| || Sbjct 2794617 AATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCAC 2794676 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || || ||||| ||||||||||| || || |||||||| || Sbjct 2794677 CTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | ||| || ||||||||||| || |||| Sbjct 3238135 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGA 3238194 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || ||||| ||||| || || |||||||||||||||||||| ||| || Sbjct 3238195 CAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGG 3238254 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || ||||| |||||||| |||||| || || | || |||||||| || | ||| | Sbjct 3238255 AATTCCTTCCTTATCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAA 3238313 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||||||||| | || || || || |||||||| Sbjct 3238314 CCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | ||| || |||||||||||||| |||| Sbjct 3108653 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 3108712 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| || || || || || || | ||||||||| ||| || Sbjct 3108713 CAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || || ||||||||||| |||||| || || |||| |||||||| || | || | Sbjct 3108773 AATTCCTTCTTTGTCTTGGAT-TTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCA 3108831 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | || || || |||||||||||||| | || || ||||| || |||||||| Sbjct 3108832 CCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 >seq3 Length=2452883 Score = 118 bits (130), Expect = 2e-21 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 316947 AATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGC 317006 |||||| || ||| || |||| | ||| || |||||| || |||||||| || | Sbjct 1687207 AATGAAATCGACGGAAGGAGTGTCGGCTTCAGACTCGTCGATATCGTGCTCAACGTAGAC 1687148 Query 317007 AGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCAT 317066 || ||| | || ||||| ||||| | |||||||| ||||| || | ||| Sbjct 1687147 GGTACGGAGATGA------GTAGGGAAACCTTCAACTTGACCGTTGACAATGGCACGCAT 1687094 Query 317067 CAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAG 317126 || || ||||| || | ||| || || |||||||||||||| ||| || ||| || Sbjct 1687093 AAGGGTAGACTTACCGGAACCGTTAGGACCGCAAAGACCATAACGACGACCACGCTTAAG 1687034 Query 317127 ATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATC 317186 | | ||| || ||| ||||||||||| ||||||| || |||||||||||||| | Sbjct 1687033 ACGGAGACGAGTACGGTTAAGAAGAATCTTGGCACCATAAGCAAGAGAGAACTCACAGTT 1686974 Query 317187 ACACAGGTCCTCGCC 317201 || || ||||| || Sbjct 1686973 GCAAAGATCCTCACC 1686959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739146354616