Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq2 199 4e-46
>seq2
Length=4539804
Score = 199 bits (220), Expect = 4e-46
Identities = 565/858 (66%), Gaps = 25/858 (3%)
Strand=Plus/Minus
Query 23240 TTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAG 23299
|||| || |||||||| || || |||| || ||||| ||||| ||||| || ||||| |
Sbjct 3722835 TTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGG 3722776
Query 23300 AAGTATTATATACAGCTTTACATGAT--AATTCCTTTAAAAGCCTATCTGCTACAAATTC 23357
|| |||| ||| ||| || | || | | ||| || ||||||||
Sbjct 3722775 T--TACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTC 3722718
Query 23358 AATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATA 23417
|||||| |||||||||||||| | || ||||| | || | || |||| || ||
Sbjct 3722717 AATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGT 3722658
Query 23418 TAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT---TTGAACAATAACTTCTTC 23474
||| || ||| ||||| |||||| || ||| || || ||||| |||
Sbjct 3722657 GAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAAC--CTTGCGG 3722600
Query 23475 ACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTC 23534
|| ||| | || |||| |||||| ||||| ||||| || || || || ||
Sbjct 3722599 CCT-GGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTC 3722541
Query 23535 ATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAAT 23594
||| | || |||||||||||| ||||| || | || ||||| | ||| ||||| ||||
Sbjct 3722540 ATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAG 3722481
Query 23595 CCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654
|||||| || | ||||| ||||| |||||||| ||||| || ||||| |||||||| ||
Sbjct 3722480 CCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAAC 3722421
Query 23655 AAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTT 23714
| ||| | || | || | || | |||| |||||| | ||| || || ||
Sbjct 3722420 CAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTT 3722361
Query 23715 CAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATC 23774
|| | | | | |||||| ||| || | || || |||||| | | ||
Sbjct 3722360 GGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTC 3722301
Query 23775 TGTTATATATGTATCAATTAGTAAACT--ATACATTTCAGAATGAATATTTTCAATAGCA 23832
|| |||||||||| | ||| | || | ||||| |||||||||||||| |
Sbjct 3722300 ACGAATGTATGTATCAAGCA--AAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATA 3722243
Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCA----TTAAAAAATCT 23888
|| || || ||||||| ||| | |||||||| | ||||| ||| | ||| ||
Sbjct 3722242 ATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTC- 3722184
Query 23889 TTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTT 23948
|| | ||| || |||||||||||||| ||||| || | || || |||
Sbjct 3722183 --GAG-AAGATTCTCATTAACAATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGA 3722127
Query 23949 TATAAAATGTCTTTCATCAGTTGATAATTTTTT---CCAATCATTAATATCTTTTGATAA 24005
||||| | | |||||||| ||| || || ||||||| | ||||| || |
Sbjct 3722126 AATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAG 3722067
Query 24006 ATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATC 24065
||||| ||| ||| | ||||||||| ||| || ||| || | | ||||||| ||
Sbjct 3722066 ATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTC 3722007
Query 24066 ATTATGTTGTATTGGAAA 24083
| || | ||||||||
Sbjct 3722006 GTGATACTTAATTGGAAA 3721989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521487973925600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |