Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 199 4e-46 >seq2 Length=4539804 Score = 199 bits (220), Expect = 4e-46 Identities = 565/858 (66%), Gaps = 25/858 (3%) Strand=Plus/Minus Query 23240 TTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAG 23299 |||| || |||||||| || || |||| || ||||| ||||| ||||| || ||||| | Sbjct 3722835 TTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGG 3722776 Query 23300 AAGTATTATATACAGCTTTACATGAT--AATTCCTTTAAAAGCCTATCTGCTACAAATTC 23357 || |||| ||| ||| || | || | | ||| || |||||||| Sbjct 3722775 T--TACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTC 3722718 Query 23358 AATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATA 23417 |||||| |||||||||||||| | || ||||| | || | || |||| || || Sbjct 3722717 AATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGT 3722658 Query 23418 TAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT---TTGAACAATAACTTCTTC 23474 ||| || ||| ||||| |||||| || ||| || || ||||| ||| Sbjct 3722657 GAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAAC--CTTGCGG 3722600 Query 23475 ACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTC 23534 || ||| | || |||| |||||| ||||| ||||| || || || || || Sbjct 3722599 CCT-GGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTC 3722541 Query 23535 ATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAAT 23594 ||| | || |||||||||||| ||||| || | || ||||| | ||| ||||| |||| Sbjct 3722540 ATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAG 3722481 Query 23595 CCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654 |||||| || | ||||| ||||| |||||||| ||||| || ||||| |||||||| || Sbjct 3722480 CCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAAC 3722421 Query 23655 AAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTT 23714 | ||| | || | || | || | |||| |||||| | ||| || || || Sbjct 3722420 CAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTT 3722361 Query 23715 CAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATC 23774 || | | | | |||||| ||| || | || || |||||| | | || Sbjct 3722360 GGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTC 3722301 Query 23775 TGTTATATATGTATCAATTAGTAAACT--ATACATTTCAGAATGAATATTTTCAATAGCA 23832 || |||||||||| | ||| | || | ||||| |||||||||||||| | Sbjct 3722300 ACGAATGTATGTATCAAGCA--AAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATA 3722243 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCA----TTAAAAAATCT 23888 || || || ||||||| ||| | |||||||| | ||||| ||| | ||| || Sbjct 3722242 ATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTC- 3722184 Query 23889 TTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTT 23948 || | ||| || |||||||||||||| ||||| || | || || ||| Sbjct 3722183 --GAG-AAGATTCTCATTAACAATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGA 3722127 Query 23949 TATAAAATGTCTTTCATCAGTTGATAATTTTTT---CCAATCATTAATATCTTTTGATAA 24005 ||||| | | |||||||| ||| || || ||||||| | ||||| || | Sbjct 3722126 AATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAG 3722067 Query 24006 ATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATC 24065 ||||| ||| ||| | ||||||||| ||| || ||| || | | ||||||| || Sbjct 3722066 ATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTC 3722007 Query 24066 ATTATGTTGTATTGGAAA 24083 | || | |||||||| Sbjct 3722006 GTGATACTTAATTGGAAA 3721989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487973925600