Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 5e-24
seq2 111 1e-19
>seq1
Length=5579133
Score = 125 bits (138), Expect = 5e-24
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
||| || |||||||| ||| ||||||||||||||| ||||| | | || ||||
Sbjct 3238150 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTC 3238209
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| || ||||| || |||||||||||||| || ||||| | ||| | |||||||| ||
Sbjct 3238210 CTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATC 3238269
Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
|| || ||| || ||| | || ||||| | |||||| ||||| | |||||
Sbjct 3238270 TTGGATTTTGCTCTTGACATTGT--CAATAGTGTCAGAGGATTCAACCTCAAGGGTAATG 3238327
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| ||||| || || ||||| |||||
Sbjct 3238328 GTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||| |||||||| |||||||| | || || | || |||
Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCC 2794575
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| |||||||| ||||| || || ||||| | ||| | |||||||| |||
Sbjct 2794576 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGA 2794635
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||| | |||||||||||| | || || || |
Sbjct 2794636 ATCTTACTCTTGACATTGT--CAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTT 2794693
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || | ||||| || || || |||||
Sbjct 2794694 TACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
||| || |||||||| ||| ||||||||||||||||||||| | | || | ||
Sbjct 3108668 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATC 3108727
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| | |||||| || || || || | ||| || ||||| | ||| | ||||| || ||
Sbjct 3108728 TTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 3108787
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
|| || ||| | | | || ||||| | ||| |||||||| | ||||||||
Sbjct 3108788 TTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGT 3108847
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||| ||||| || ||||| ||||||||
Sbjct 3108848 CTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880
>seq2
Length=4539804
Score = 111 bits (122), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||| ||||||||||| | || || | || ||
Sbjct 1045358 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045417
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || ||||| || | ||| || ||||| | ||| | |||||||| |||
Sbjct 1045418 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045477
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| |||| ||||| || |||| ||||| ||||
Sbjct 1045478 ATCTTGCTCTTTACATTGT--CAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCT 1045535
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||| || | ||||| ||||| || ||||||
Sbjct 1045536 TTCCAGTTAATGTCTTGACGAAAATCTGCATG 1045567
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||| ||||||||||| | || || |||| ||
Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044961
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || ||||| || | ||| || ||||| | ||| | |||||||| |||
Sbjct 1044962 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045021
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||| | || || || |||| ||||| || ||
Sbjct 1045022 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045081
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||| || || || ||||||||
Sbjct 1045082 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||| ||||||||||| | || || | || ||
Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1044505
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || ||||| || | ||| || ||||| | ||| | |||||||| |||
Sbjct 1044506 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044565
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||| | || || || |||| ||||| || ||
Sbjct 1044566 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044625
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||| || || || ||||||||
Sbjct 1044626 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||||| ||||||||||| | || || |||| || || ||||| || |||||
Sbjct 1044691 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044750
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|| | ||| || ||||| | ||| | |||||||| ||| ||||| ||| | |
Sbjct 1044751 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1044810
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || || |||| ||||| || || || || | ||| || ||
Sbjct 1044811 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1044870
Query 44326 GAAGATTTGCAT 44337
|| ||||||||
Sbjct 1044871 AAAAATTTGCAT 1044882
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||||| ||||||||||| | || || | || || || ||||| || |||||
Sbjct 1045147 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1045206
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|| | ||| || ||||| | ||| | |||||||| ||| ||||| ||| | |
Sbjct 1045207 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1045266
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || || |||| ||||| || || || || | ||| || ||
Sbjct 1045267 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1045326
Query 44326 GAAGATTTGCAT 44337
|| ||||||||
Sbjct 1045327 AAAAATTTGCAT 1045338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990382450468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |