Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 125 5e-24 seq2 111 1e-19 >seq1 Length=5579133 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| || |||||||| ||| ||||||||||||||| ||||| | | || |||| Sbjct 3238150 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTC 3238209 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || || ||||| || |||||||||||||| || ||||| | ||| | |||||||| || Sbjct 3238210 CTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATC 3238269 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || || ||| || ||| | || ||||| | |||||| ||||| | ||||| Sbjct 3238270 TTGGATTTTGCTCTTGACATTGT--CAATAGTGTCAGAGGATTCAACCTCAAGGGTAATG 3238327 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||| || || ||||| ||||| Sbjct 3238328 GTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||| |||||||| |||||||| | || || | || ||| Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCC 2794575 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| |||||||| ||||| || || ||||| | ||| | |||||||| ||| Sbjct 2794576 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGA 2794635 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||| | |||||||||||| | || || || | Sbjct 2794636 ATCTTACTCTTGACATTGT--CAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTT 2794693 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| || || || ||||| Sbjct 2794694 TACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| || |||||||| ||| ||||||||||||||||||||| | | || | || Sbjct 3108668 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATC 3108727 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || | |||||| || || || || | ||| || ||||| | ||| | ||||| || || Sbjct 3108728 TTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 3108787 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 || || ||| | | | || ||||| | ||| |||||||| | |||||||| Sbjct 3108788 TTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGT 3108847 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| ||||| || ||||| |||||||| Sbjct 3108848 CTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 >seq2 Length=4539804 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||||||| ||||||||||| | || || | || || Sbjct 1045358 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045417 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||| || | ||| || ||||| | ||| | |||||||| ||| Sbjct 1045418 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045477 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| ||||| || |||| ||||| |||| Sbjct 1045478 ATCTTGCTCTTTACATTGT--CAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCT 1045535 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || | ||||| ||||| || |||||| Sbjct 1045536 TTCCAGTTAATGTCTTGACGAAAATCTGCATG 1045567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||||||| ||||||||||| | || || |||| || Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044961 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||| || | ||| || ||||| | ||| | |||||||| ||| Sbjct 1044962 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045021 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || || |||| ||||| || || Sbjct 1045022 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045081 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || || || |||||||| Sbjct 1045082 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||||||| ||||||||||| | || || | || || Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1044505 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||| || | ||| || ||||| | ||| | |||||||| ||| Sbjct 1044506 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044565 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || || |||| ||||| || || Sbjct 1044566 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044625 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || || || |||||||| Sbjct 1044626 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| ||||||||||| | || || |||| || || ||||| || ||||| Sbjct 1044691 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044750 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||| || ||||| | ||| | |||||||| ||| ||||| ||| | | Sbjct 1044751 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1044810 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | || || || |||| ||||| || || || || | ||| || || Sbjct 1044811 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1044870 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 1044871 AAAAATTTGCAT 1044882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| ||||||||||| | || || | || || || ||||| || ||||| Sbjct 1045147 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1045206 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||| || ||||| | ||| | |||||||| ||| ||||| ||| | | Sbjct 1045207 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1045266 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | || || || |||| ||||| || || || || | ||| || || Sbjct 1045267 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1045326 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 1045327 AAAAATTTGCAT 1045338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990382450468