Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 8e-34
seq2 134 3e-26
>seq1
Length=5579133
Score = 159 bits (176), Expect = 8e-34
Identities = 167/219 (76%), Gaps = 3/219 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| ||||| || || || || ||||| ||||| ||||||||
Sbjct 3108883 AAAATGC---AAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAG 3108827
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||| || || || ||||| || || || |||||||||||||| |||||
Sbjct 3108826 TCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCT 3108767
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||||| ||||| ||||| || || ||| | ||||||||| | ||| | | |||
Sbjct 3108766 GATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGAT 3108707
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| ||| ||||||| || || || || || || ||||||
Sbjct 3108706 TACAACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTG 3108668
Score = 154 bits (170), Expect = 4e-32
Identities = 167/220 (76%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971
||| ||| | | || ||||| || || ||| | || || ||||| || ||||| ||||||
Sbjct 2794733 GTTGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTG 2794674
Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031
||| ||| ||||| || || || ||||| |||||||||||||| |||||||| |||
Sbjct 2794673 GAATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCT 2794614
Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091
|| || || |||||| | || || |||||||| ||| | || ||||| | |||||| |
Sbjct 2794613 CCTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCT 2794554
Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
||||| || |||||||||| || || || || |||| ||
Sbjct 2794553 GATTACAATATCCAAAAAGAGTCCACTCTTCA-CTTGGTT 2794515
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || ||||| || |||||||| |||||||| ||| |||
Sbjct 3969012 CAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 3969071
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| || || || ||||| |||||||| ||||| ||||| |||
Sbjct 3969072 ACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAACAA 3969131
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| ||||| || | || ||||| | |||||| | || || ||| |
Sbjct 3969132 CGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAACATT 3969191
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || ||| | |||
Sbjct 3969192 CAAAAGGAGTCTACCCTTCATTTAGTT 3969218
>seq2
Length=4539804
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || ||||| || || | || || || || |||
Sbjct 1045335 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1045276
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1045275 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045216
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || || ||||||||| | |||||| | ||||| ||| |
Sbjct 1045215 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045156
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || |||||||||
Sbjct 1045155 CAAAAGGAGTCTACTCTACATCTTGTT 1045129
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || ||||| || || | || || || || |||
Sbjct 1044651 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1044592
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1044591 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044532
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || || ||||||||| | |||||| | ||||| ||| |
Sbjct 1044531 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1044472
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 1044471 CAAAAGGAGTCTACTCTTCACCTTGTT 1044445
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || ||||| || || | || || || || |||
Sbjct 1044879 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1044820
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1044819 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044760
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || || ||||| ||| | |||||| | ||||| ||| |
Sbjct 1044759 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATT 1044700
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || |||||||||
Sbjct 1044699 CAAAAGGAGTCTACTCTACATCTTGTT 1044673
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || || ||||| || || | || || || || |||
Sbjct 1045107 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1045048
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1045047 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044988
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || || ||||| ||| | |||||| | ||||| ||| |
Sbjct 1044987 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATT 1044928
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 1044927 CAAAAGGAGTCTACTCTTCACCTTGTT 1044901
Score = 122 bits (134), Expect = 2e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || ||||| || || || | || || ||| || ||
Sbjct 1045563 CAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCCGAT 1045504
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || ||||||||||| || ||||| || ||||| || || |||
Sbjct 1045503 ACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045444
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || || ||||||||| | |||||| | ||||| ||| |
Sbjct 1045443 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045384
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 1045383 CAAAAGGAGTCTACTCTTCACCTTGTT 1045357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731138308776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |