Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq2 134 3e-26 >seq1 Length=5579133 Score = 159 bits (176), Expect = 8e-34 Identities = 167/219 (76%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| ||||| || || || || ||||| ||||| |||||||| Sbjct 3108883 AAAATGC---AAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAG 3108827 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| || || || ||||| || || || |||||||||||||| ||||| Sbjct 3108826 TCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCT 3108767 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| ||||| ||||| || || ||| | ||||||||| | ||| | | ||| Sbjct 3108766 GATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGAT 3108707 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| ||||||| || || || || || || |||||| Sbjct 3108706 TACAACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTG 3108668 Score = 154 bits (170), Expect = 4e-32 Identities = 167/220 (76%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 ||| ||| | | || ||||| || || ||| | || || ||||| || ||||| |||||| Sbjct 2794733 GTTGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTG 2794674 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 ||| ||| ||||| || || || ||||| |||||||||||||| |||||||| ||| Sbjct 2794673 GAATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCT 2794614 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || || || |||||| | || || |||||||| ||| | || ||||| | |||||| | Sbjct 2794613 CCTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCT 2794554 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || |||||||||| || || || || |||| || Sbjct 2794553 GATTACAATATCCAAAAAGAGTCCACTCTTCA-CTTGGTT 2794515 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || |||||||| |||||||| ||| ||| Sbjct 3969012 CAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 3969071 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 3969072 ACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAACAA 3969131 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| || | || ||||| | |||||| | || || ||| | Sbjct 3969132 CGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAACATT 3969191 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 3969192 CAAAAGGAGTCTACCCTTCATTTAGTT 3969218 >seq2 Length=4539804 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || || || || ||| Sbjct 1045335 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1045276 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1045275 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045216 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || || ||||||||| | |||||| | ||||| ||| | Sbjct 1045215 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045156 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||||||| Sbjct 1045155 CAAAAGGAGTCTACTCTACATCTTGTT 1045129 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || || || || ||| Sbjct 1044651 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1044592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1044591 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044532 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || || ||||||||| | |||||| | ||||| ||| | Sbjct 1044531 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1044472 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || || |||||| Sbjct 1044471 CAAAAGGAGTCTACTCTTCACCTTGTT 1044445 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || || || || ||| Sbjct 1044879 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1044820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1044819 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044760 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || || ||||| ||| | |||||| | ||||| ||| | Sbjct 1044759 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATT 1044700 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||||||| Sbjct 1044699 CAAAAGGAGTCTACTCTACATCTTGTT 1044673 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || || || || ||| Sbjct 1045107 CAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGAC 1045048 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1045047 ACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1044988 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || || ||||| ||| | |||||| | ||||| ||| | Sbjct 1044987 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATT 1044928 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || || |||||| Sbjct 1044927 CAAAAGGAGTCTACTCTTCACCTTGTT 1044901 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || ||||| || || || | || || ||| || || Sbjct 1045563 CAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCCGAT 1045504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||||| || ||||| || ||||| || || ||| Sbjct 1045503 ACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045444 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || || ||||||||| | |||||| | ||||| ||| | Sbjct 1045443 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045384 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || || |||||| Sbjct 1045383 CAAAAGGAGTCTACTCTTCACCTTGTT 1045357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731138308776