Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9 113 5e-20 >seq9 Length=1448665 Score = 113 bits (124), Expect = 5e-20 Identities = 337/512 (66%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| | |||||||||||||| || ||||| | | || || |||| Sbjct 449020 TTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTCT 448961 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||||| || || || || | || | | ||| || |||| | ||| | Sbjct 448960 CCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACGAGGA 448901 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTA-ATTCGCAGTTCATTCCTATAAGA 16852 | ||| || || || || || ||||| ||| | | | | ||||||| || | || Sbjct 448900 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAG-AGTTCATGCCCAAGAGG 448842 Query 16853 -CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || | |||||||| || ||||| ||| ||| || || |||| ||||| |||| | Sbjct 448841 GCGCAA-GGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGAC 448783 Query 16912 A-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | || | | | || | ||| || || || ||||| || | || ||||||| Sbjct 448782 ATCTTGGACGGC-TTGTTTGGATGGGCGGTGCTTGAGATGAGAGAAAAGGAGGCATGCGA 448724 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 ||||| || | || ||||| | | ||| |||||||| || || || | || | || Sbjct 448723 AATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 448664 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | || || ||||| | ||| || || | ||||| || ||||| ||||| ||||||| Sbjct 448663 TGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCT 448604 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATT 17150 | || | || || || | | |||| || | || | || |||| ||||||||| Sbjct 448603 CAACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCATT 448544 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 | |||| ||||| || | ||| |||||| Sbjct 448543 TGACAGCCCAGTCGGCCTTCTTCTTAATGCAA 448512 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| || ||| |||||||||| ||||| ||||| || || Sbjct 448407 ATGTATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTTTCCATCATGATTTGG 448348 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| |||||||| ||||| | ||||||||||| || ||||| || | | Sbjct 448347 AAACCGTAGAAGCATCGTGCTTCTGGAATTTGAACTTCACCGCTGAATCTCTCGACCAAG 448288 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||||| || || || ||| || ||||| || || Sbjct 448287 TTCTCGTTTACAATTCCATCGGATGCTGCGAAGAATGC 448250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543555694880