Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36 286 4e-72 seq9 131 2e-25 >seq36 Length=569963 Score = 286 bits (316), Expect = 4e-72 Identities = 1323/2073 (64%), Gaps = 65/2073 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || |||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 132103 GTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 132044 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | ||||||| |||||||||| ||| | ||| | ||||| || Sbjct 132043 CCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 131984 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 131983 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 131924 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || ||| | ||||||||||| ||| || |||| || || || |||||| | Sbjct 131923 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAATG 131864 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || ||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 131863 TTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 131804 Query 53105 CATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 53159 || | || | | | ||| || | ||||| || ||||| ||||| |||| Sbjct 131803 CAGAGACCCATATCCACAAGGT-----CTTTGAGGAGCCATGGGTTAACAACTTGGAATT 131749 Query 53160 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 53219 |||||| | || | || | ||| || || ||||| ||||| | | | || || Sbjct 131748 CTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGA 131689 Query 53220 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 || | ||||| | ||| ||||| ||||||||||| || | | || | || Sbjct 131688 AACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAA 131629 Query 53280 GACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 53339 |||| | |||| | || | || ||||||| ||| | ||| || || | Sbjct 131628 TTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGA 131569 Query 53340 CNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTA 53395 | ||| || ||| || ||||| | | ||| ||| || Sbjct 131568 CGCCCCACATGTCATATTGGAGTTCACCCTTGGAGACTGGGG----AGCCTTGATAGGTT 131513 Query 53396 TCGTATGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 ||||| || || |||||| || || | ||| | || || ||| ||| || Sbjct 131512 TCGTACGGGCCAAGTTCCTTTGCAATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTA 131457 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 |||||| ||||| |||| | || || | |||| ||||| | |||||||||| | Sbjct 131456 AATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAATGGAAGAC 131398 Query 53511 TTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 ||||| || ||| || || || | ||||||||||||| | ||||||||| || | Sbjct 131397 G-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGGTGACG 131340 Query 53569 CTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 ||| | |||| | ||||| | | |||||||| || ||||| || || || || | Sbjct 131339 GAAATT-GCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCA 131281 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-- 53685 |||||| || | |||| ||| || || | || || | |||||| | ||| || Sbjct 131280 AGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCAT 131221 Query 53686 ---TATT-AC-AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 | || || ||| || | | ||||| || |||| ||||| || ||||||| Sbjct 131220 TCATGTTGACGAAAGTTGGTAGA-GCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCT 131162 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | | || | | ||||| ||||| | || | || || || | || Sbjct 131161 GGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTC 131102 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 | ||| || ||||| ||||| || ||||| || ||||| ||||| || | || || || Sbjct 131101 TTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCG 131042 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 | || | || | ||| | | ||| | ||||||| || || ||| | | Sbjct 131041 GTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCC 130985 Query 53921 TTTTCTC---TTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 ||| || |||| || | ||| | | | || ||||| || || |||||| Sbjct 130984 TTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTG 130927 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 |||| ||||| ||||||| || ||||| | | ||| ||||| | | | || || | Sbjct 130926 CCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCT 130867 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 54094 |||| || | |||||||||||| | || ||| || ||||| | | | | ||| || Sbjct 130866 TCATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGCGCACGAACTTCTTCC 130808 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || || || || ||||| || ||| | | || ||| | |||||| || || | | Sbjct 130807 TTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGG 130748 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || | | | | ||||| |||||||| || || ||||| | ||||| || ||||| Sbjct 130747 TAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTG 130688 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || |||||| | ||| |||| |||||||||||| || ||||| |||| ||| || Sbjct 130687 TTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTAT 130628 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 ||| | ||||| || | ||| ||||| || || || || | || ||||| Sbjct 130627 GCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATC 130568 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | || || || || ||||| ||||| || || ||||| || ||| |||||| | Sbjct 130567 ATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATG 130508 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || || || | ||| | ||| |||||| ||| | || || ||||| Sbjct 130507 AGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCA 130448 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCA 54513 || ||||| | || | || | | ||||| || |||||||| || ||||| || Sbjct 130447 TGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCA 130388 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||||| || || || |||||||| | ||| || ||||| | ||| | | ||| Sbjct 130387 CCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCC 130329 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 54631 | | | | || ||| || | || ||||| || || || | ||| |||| Sbjct 130328 ATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAGTTGAA 130269 Query 54632 AAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 54691 | || | || || | |||| | |||||||||| |||| || | | | || || Sbjct 130268 A--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCG 130211 Query 54692 ATGGTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAA 54750 | || | |||| ||| || ||||| ||| |||||||| || || ||| | | Sbjct 130210 AAAGT-TTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTATATTGGTA 130152 Query 54751 TAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 54810 |||||| || || | ||| |||| || |||| |||||| || ||||| || || Sbjct 130151 TAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTGACACTGC 130092 Query 54811 TATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || | ||| ||||||||||||||||| ||||| Sbjct 130091 AATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 131 bits (144), Expect = 2e-25 Identities = 339/514 (66%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| || || || | ||||||||||| || || || || | || || || || Sbjct 449021 TTTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTC 448962 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 |||||||| ||| |||| |||| | || |||| | | | ||||| || | Sbjct 448961 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACGAGG 448902 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | | ||| ||||| ||||| || ||| ||||| | | | ||||| || | || Sbjct 448901 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCCAAGAGG 448842 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 448841 GCGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 448782 Query 24084 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 |||| || | || || || | | | | ||| || | | ||||||| Sbjct 448781 --TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAAAAGGAGGCATGCGA 448724 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 ||||| ||| ||||| ||||| | || | ||||||||| || |||||||| | || Sbjct 448723 AATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 448664 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 24261 | || |||||||| || ||||| || ||||| || || |||||||| ||||| || || | Sbjct 448663 TGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCT 448604 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACT 24318 | || || || || |||| || | || || | | | |||| || ||||| | Sbjct 448603 CAACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCATT 448544 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | |||||| ||||||||||| || | ||||| Sbjct 448543 TGACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 448510 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 ||||| || || | |||| || |||| || || |||||||| || ||||| || Sbjct 448404 TATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTTTCCATCATGATTTGGAAA 448345 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 |||||||| |||| || || | ||| || ||||| | |||| || | || || Sbjct 448344 CCGTAGAAGCATCGTGCTTCTGGAATTTGAACTTCACCGCTGAATCTCTCGACCAAGTTC 448285 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 || || || ||||| || ||||| || || || | || || || || || Sbjct 448284 TCGTTTACAATTCCATCGGATGCTGCGAAGAATGCGAGAACGTGGGAGATGAAGTAACGC 448225 Query 24585 TCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641 ||||| | ||| ||||||||||| | | ||| || || | ||| | ||||| Sbjct 448224 TCGTCGTCATTGAGTCTATTATTCCAATCGTGAAGATCCTTTGACAAATCAATCTCTTCT 448165 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 448164 GCGGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGAT 448121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719254799680