Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq9 111 2e-19 seq1 96.9 4e-15 seq3 84.2 2e-11 >seq4 Length=2737121 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||||||||| |||||| |||| || || | | Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| ||||| ||||| | ||||| Sbjct 1683060 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 1683001 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| || || || || || || | |||||||| |||||||||| Sbjct 1683000 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 1682941 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || ||||||| || Sbjct 1682940 ATCCAAAAGGAGTCCACTCTTCACTTAGTGTTACG 1682906 >seq9 Length=1448665 Score = 111 bits (122), Expect = 2e-19 Identities = 196/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| || ||| | || || Sbjct 448121 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACCGCAGAAGAGATTGATTTG 448180 Query 116696 TCCAAGGACACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||| ||| | | | || ||| ||||||| | |||||| Sbjct 448181 TCAAAGGATCTTCACGATTGGAATAATAGACTCAATGACGACGAGCGTTACTTCATCTCC 448240 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || ||| || || || |||||||| |||||||| | Sbjct 448241 CACGTTCTCGCATTCTTCGCAGCATCCGATGGAATTGTAAACGAGAACTTGGTCGAGAGA 448300 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || || | | || || || ||||||||||| || || ||| ||| Sbjct 448301 TTCAGCGGTGAAGTTCAAATTCCAGAAGCACGATGCTTCTACGGTTTCCAAATCATGATG 448360 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || ||| | ||||| |||| || || ||||||||||| ||| Sbjct 448361 GAAAACATCCACTCCGAAACATACTCTCTTCTCATCGACACATAC 448405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 || || || || ||||| || || ||||| ||||||| || || |||||| |||| Sbjct 448579 CGTCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGATCTTTCGCATCCATC 448638 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| || || |||||| | || || || ||| |||||| ||||||||| Sbjct 448639 TTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGACTCACCTTCTCCAACGAACTCATCTCC 448698 Query 117158 AGGGACGAGGGTCTGCA 117174 | ||||| ||||| || Sbjct 448699 CGTGACGAAGGTCTCCA 448715 >seq1 Length=2965994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || || || | | Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| |||||||||||||| ||| | || || Sbjct 1570039 GACACCATCGACAACG-TGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCA 1569981 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || || || || || || || | ||||| || ||||||||| Sbjct 1569980 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAA 1569921 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 1569920 CATCCAAAAAGA 1569909 >seq3 Length=2936196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 1398663 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 1398722 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | |||| || || | ||||||||||| || ||| | || || ||||| | Sbjct 1398723 GACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCCGATCAACAACGTTTG 1398782 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || || || |||| || || || || ||||||||||| ||| Sbjct 1398783 ATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCTTTCAGATTACAACATCCAAAAG 1398842 Query 40879 G 40879 | Sbjct 1398843 G 1398843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217164884160