Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 132 4e-26 seq1 100 2e-16 seq3 89.7 4e-13 seq9 84.2 2e-11 >seq4 Length=2737121 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| ||||| | || ||||| ||||| |||||||| ||| | ||||| |||| Sbjct 1682909 AACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 1682968 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || ||||| ||| |||| | ||||| || ||||| || || |||||||||||| Sbjct 1682969 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 1683028 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || ||| || | |||| |||||||| ||| ||||||| ||| | ||| Sbjct 1683029 TGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTT 1683088 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || || || || || || ||||||||| || Sbjct 1683089 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 1683124 >seq1 Length=2965994 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | |||||||||| |||||||| || ||||||||||||||| Sbjct 1570099 TACCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGG 1570158 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| || || ||||| ||| | || | ||| || || ||||| | Sbjct 1570159 AGAGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGG 1570218 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| ||| || || || || | |||| ||||| || ||||| Sbjct 1570219 GAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGA 1570278 Query 118690 CCTCGACGGTCACCGTTTTGCCGGT 118714 |||| | ||| | || || ||||| Sbjct 1570279 CCTCAAGGGTGATGGTCTTTCCGGT 1570303 >seq3 Length=2936196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| ||||||||||| | ||| || ||||| || || ||||||||| |||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||| || |||||||| || || ||||| |||||| || || ||||| | ||| Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| | | ||||||||| | ||| | || ||||| || || || || || || Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 >seq9 Length=1448665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45072 CCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGG 45131 |||||||||| | ||||| ||||| || | |||||||| || | | ||| Sbjct 448790 CCGAAGCCGTTGAAATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCGCCCTCTTGG 448849 Query 45132 GAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCC 45191 | |||||| | | | | |||| | ||||||||||| ||||| |||||||| ||||| Sbjct 448850 GCATGAACTCTACTCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCGT-T 448908 Query 45192 AGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATT 45250 || ||| | ||| | ||| | ||| ||||||||||| || ||| | || ||| Sbjct 448909 GCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATT 448968 Query 45251 TCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATAC 45298 || |||| ||||| || || ||||| || || | || || || ||| Sbjct 448969 TCCTTGGCTGGCAAGACCAACTTTTTCGAAAAGAGAGTTGGAGATTAC 449016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828729210672