Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 136 8e-27 seq36 96.9 7e-15 seq8 96.9 7e-15 >seq9 Length=1448665 Score = 136 bits (150), Expect = 8e-27 Identities = 346/525 (66%), Gaps = 6/525 (1%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 ||| |||||||||| | |||||| | || ||||| ||| ||| ||| | || || Sbjct 448515 CATTAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGACAAGAACTCTACCTTTGC 448574 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | ||||| || || || ||||| || |||||||| ||| | |||||||| Sbjct 448575 TCAACGTCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGATCTTTCGCATC 448634 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| |||||| ||||||| | ||| | || |||| ||||||| |||||| || |||| Sbjct 448635 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGACTCACCTTCTCCAACGAACTCAT 448694 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | ||||||||||| || ||| || |||||| | || || | | | Sbjct 448695 CTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTTTTCTCTCA---TCTCAA 448751 Query 102088 TGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACA 102147 | |||||| | | || | | || | | || |||||||| ||| ||||| Sbjct 448752 GCACCGCCCATCCAAACAAGCCGTCCAAGATGTCATTACCGAAGCCGTTGAAATCGAACA 448811 Query 102148 AGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 |||||| | || | | || ||| | |||| ||||||| | | |||| Sbjct 448812 AGAATTCTTGACCGAGGCTCTTCCTTGCGCCCTCTTGGGCATGAACTCTACTCTCATGAA 448871 Query 102208 CCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTA 102267 || |||||||| || || || ||| || | |||| |||| || || ||| Sbjct 448872 GCAATACATTGAGTTCGTCGCTGATCGTCTCCTCGTTGCTTTGGGTAACGACAAAGTCTA 448931 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 || | ||||||| ||| |||||||| || |||||| | | ||||||||||| Sbjct 448932 CAAGTCTGCCAACCCATTCGACTTCATGGAGAACATTTCCTTGGCTGGCAAGACCAACTT 448991 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGC 102372 ||| ||||||||||| | || || ||| ||| |||||||| Sbjct 448992 TTTCGAAAAGAGAGTTGGAGATTACCAAAAGGCCGGTGTCATGGC 449036 >seq36 Length=569963 Score = 96.9 bits (106), Expect = 7e-15 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| || || || | || || ||| |||| ||||| || || ||| | |||| Sbjct 130606 TGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCAAAGTA 130547 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || || ||||| ||||| || || || | | | | | |||||||| || |||||||| Sbjct 130546 TCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGAAAGTTGT 130487 Query 94894 GGT-GTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | | ||| || || | ||| ||||| ||||||||||| ||||| || | | || Sbjct 130486 GCTTGTGGA-GTACCCGCAGAAAAGAGTGTTGGGGAAGCATGTGTAAAGTACTTGTTTGA 130428 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| | | |||||||| || || || ||| || |||||||| || || || || Sbjct 130427 CATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAACGGCAAC 130368 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039 |||||| ||||| | ||||| || || Sbjct 130367 ACGCATGATCATTTGTTGAGGACGTTC 130341 >seq8 Length=1484259 Score = 96.9 bits (106), Expect = 7e-15 Identities = 167/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 35385 ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTG 35444 || |||| || |||||||| || |||||||| || ||||||||||| ||||| || ||| Sbjct 1481411 ATCGAGCCGAAGGAGATTTAGGTCCCGTATATGGTTTCCAATGGCGACATTTCGGCGCTA 1481470 Query 35445 AATAT---GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA 35501 ||||| ||| || | |||||||| ||| | ||| |||||||| | || | | Sbjct 1481471 AATATATCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGATCAACTTGCGGAAA 1481527 Query 35502 TACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAAT 35560 | || || || | |||| || ||| ||||| ||||| ||| | | ||||||||| Sbjct 1481528 TTGTATGGAAGCTCA-AGAATAACCCATGGGATAGGAGGATTATTTTAAGTGCATGGAAT 1481586 Query 35561 CCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| || | | ||||| | || || || || ||| ||| ||||||||||| Sbjct 1481587 GTGGCAGATATTAAGTTGATGGCGTTACCACCTTGTCATATGTTTGCGCAATTTTATGT 1481645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579993421780