Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq36 282 5e-71 seq9 132 6e-26 >seq36 Length=569963 Score = 282 bits (312), Expect = 5e-71 Identities = 1323/2073 (64%), Gaps = 65/2073 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || |||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 132103 GTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 132044 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | ||||||| |||||||||| || | ||| | ||||| || Sbjct 132043 CCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 131984 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 131983 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 131924 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || ||| | ||||||||||| ||| || |||| || || || |||||| | Sbjct 131923 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAATG 131864 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || ||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 131863 TTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 131804 Query 62343 CATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATT 62397 || | || | | | ||| || | ||||| |||||||| |||||||||| Sbjct 131803 CAGAGACCCATATCCACAAGGT-----CTTTGAGGAGCCATGGGTTAACAACTTGGAATT 131749 Query 62398 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62457 |||||| | || | || | ||| || || ||||| ||||| | | || || Sbjct 131748 CTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGA 131689 Query 62458 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 || | ||||| | ||| ||||| ||||||||||| || | | || | || Sbjct 131688 AACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAA 131629 Query 62518 GACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA 62577 |||| | |||| | || | | ||||||| ||| | ||| || || | Sbjct 131628 TTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGA 131569 Query 62578 CANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTA 62633 | |||||| || ||| || ||||| | | ||| ||| || Sbjct 131568 CGCCCCACATGTCATATTGGAGTTCACCCTTGGAGACTGGGG----AGCCTTGATAGGTT 131513 Query 62634 TCATATGGTCC---TTCCTTCTCAG-CTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || || || || |||||| || || | ||| | || || ||| ||| || Sbjct 131512 TCGTACGGGCCAAGTTCCTTTGCAATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTA 131457 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 |||||| || || |||| | || || | |||| ||||| || |||||||||| | Sbjct 131456 AATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAATGGAAGAC 131398 Query 62749 TTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 ||||| || ||| || || || | ||||||||||||| | ||||||||| || | Sbjct 131397 G-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGGTGACG 131340 Query 62807 CTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865 ||| | |||| | ||||| | | |||||||| || ||||| || || || || | Sbjct 131339 GAAATT-GCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCA 131281 Query 62866 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCAT 62922 ||||| || | |||| ||| || || | || || | |||||| | || | ||| Sbjct 131280 AGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCAT 131221 Query 62923 CTATT---AC-AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTA 62978 || || ||| || | | |||| || |||| ||||| || ||||||| Sbjct 131220 TCATGTTGACGAAAGTTGGTAGA-GCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCT 131162 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | || | | ||||| ||||| | || | ||||| || | || Sbjct 131161 GGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTC 131102 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 | ||| || ||||| ||||| || ||||| || ||||| ||||| ||| | || || || Sbjct 131101 TTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCG 131042 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 | |||| || | ||| | | ||| | | ||||||| || || ||| | | Sbjct 131041 GTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCC 130985 Query 63159 CTTTCTC---TTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 || || |||| || | ||| | | | |||||||| || || |||||| Sbjct 130984 TTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTG 130927 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 |||| | ||| ||||||| || ||||| | | ||| ||||| | | | || || | Sbjct 130926 CCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCT 130867 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCG 63332 |||| || | |||||||||||| | || ||| || ||||| | | | | ||| || Sbjct 130866 TCATGAACAAATCAGGAATCCACA-AGGCATAGAAGAGATCGCGCGCACGAACTTCTTCC 130808 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || || || ||||| || ||| | | || ||| | |||||| || || | | Sbjct 130807 TTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGG 130748 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || | || | | ||||| |||||||| || || ||||| | ||||| || ||||| Sbjct 130747 TAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTG 130688 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || |||||| | ||| |||| |||||| || || | || |||||||||| ||| || Sbjct 130687 TTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTAT 130628 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | ||| | ||||| || | ||| ||||| || || || || | || ||||| Sbjct 130627 GCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATC 130568 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | || || || || || || ||||| || || || || || || |||||| | Sbjct 130567 ATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATG 130508 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || || || | ||| | | ||| |||||| ||| | || || ||||| Sbjct 130507 AGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCA 130448 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCA 63751 || ||||| | || | || | | ||||| || || ||||| || ||||| || Sbjct 130447 TGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCA 130388 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 | ||||| || || || |||||||| | ||| || ||||| | ||| ||| |||| Sbjct 130387 CCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCC 130329 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 63869 | | || | || ||| || | || ||||| || || || | ||| |||| Sbjct 130328 ATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAGTTGAA 130269 Query 63870 AAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC 63929 | || | || || | |||| | || ||||| | |||| || | | | || || Sbjct 130268 A--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCG 130211 Query 63930 ATGGTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63988 | || | |||| ||| || ||||| ||| |||||||| || || ||| | | | Sbjct 130210 AAAGT-TTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTATATTGGTA 130152 Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 |||||| || || | ||| |||| || |||| ||||| || ||||| | || Sbjct 130151 TAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTGACACTGC 130092 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || | || ||||||||||||||||| ||||| Sbjct 130091 AATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 132 bits (146), Expect = 6e-26 Identities = 337/512 (66%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || || || | ||||||||||| || || || || |||| || || || Sbjct 449021 TTTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTC 448962 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||| | ||||| | ||| | ||||| || | Sbjct 448961 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACGAGG 448902 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| |||||||| || || ||| ||||| | | | ||||| || | ||| Sbjct 448901 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCCAAGAGG 448842 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||||||||| | || | ||||||||||| || || || | || || | | Sbjct 448841 GCGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 448782 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 | |||| || || || | || | ||| || | | ||||||||| Sbjct 448781 TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAAAAGGAGGCATGCGAAA 448722 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 ||| ||| ||||| ||||| | || | |||||| || || |||||||| | ||| Sbjct 448721 TCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATG 448662 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 || |||||||| || ||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 448661 AGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCTCA 448602 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33767 || || || || |||| || | | || | | | |||| || ||||| || Sbjct 448601 ACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCATTTG 448542 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 |||||| ||||||||||| || | ||||| Sbjct 448541 ACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 448510 Score = 82.4 bits (90), Expect = 1e-10 Identities = 189/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||| | |||| || |||| || || |||||||| || || || || Sbjct 448404 TATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTTTCCATCATGATTTGGAAA 448345 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||||||| |||| || || | ||| || ||||| | |||| || | || || Sbjct 448344 CCGTAGAAGCATCGTGCTTCTGGAATTTGAACTTCACCGCTGAATCTCTCGACCAAGTTC 448285 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || || || |||||||| ||||| || || || | || || || || || Sbjct 448284 TCGTTTACAATTCCATCGGATGCTGCGAAGAATGCGAGAACGTGGGAGATGAAGTAACGC 448225 Query 34032 TCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 34088 ||||| | ||| ||||||||||| | | ||| || || | ||| | ||||| Sbjct 448224 TCGTCGTCATTGAGTCTATTATTCCAATCGTGAAGATCCTTTGACAAATCAATCTCTTCT 448165 Query 34089 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | ||||| || || ||||||||||| || ||||| | |||||| Sbjct 448164 GCGGTCCAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGAT 448121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815112220480