Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq36 138 1e-27 >seq36 Length=569963 Score = 138 bits (152), Expect = 1e-27 Identities = 381/584 (65%), Gaps = 0/584 (0%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || || ||||| || ||||| |||| ||||||| ||| ||||| || || | | Sbjct 130924 AAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCTTC 130865 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 || || |||||||| | ||| || ||| || | ||| | | | |||||| || Sbjct 130864 ATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGCGCACGAACTTCTTCCTTA 130805 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || || || | || ||||| ||||| | ||| || |||||||| || | ||| Sbjct 130804 CCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAA 130745 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 | | | || || || | ||| | ||| || |||| || |||||| | ||||| || Sbjct 130744 ACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTG 130685 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | || | ||| || || |||||||| || || ||||| |||||| || || | | Sbjct 130684 AAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGCA 130625 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 || |||| || || | || | || || ||||| |||| ||||| || | Sbjct 130624 CCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATG 130565 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 || || || || ||||| | ||||| || |||||||| ||||| || | | Sbjct 130564 GCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGG 130505 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 || ||| || | ||| | |||||| || || ||| | ||| || || |||||| Sbjct 130504 AAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATGT 130445 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || | || | |||| | || |||||||| || || || |||||| | ||| Sbjct 130444 GTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCG 130385 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| | | || | ||| | ||| ||||| || | ||| Sbjct 130384 TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTC 130341 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 36834 ATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT 36893 ||| |||||||| || || | |||||| ||||||| |||||||||| || | | | Sbjct 132065 ATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGCATAGATGTGA-TCT 132007 Query 36894 TGCGTAT-GTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCAC 36952 ||| || ||||||| | || | || ||||||||||| |||||| ||||| |||| Sbjct 132006 TGCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCAC 131947 Query 36953 CTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 | | || || ||||||| | ||| | |||||| || |||||||| || || || Sbjct 131946 CACGATCAGCAGCCATTTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTA 131889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522949327040