Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq36 298 7e-76 seq9 120 4e-22 >seq36 Length=569963 Score = 298 bits (330), Expect = 7e-76 Identities = 1326/2073 (64%), Gaps = 65/2073 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 || |||||||| || || || || | | ||||||| |||||||||||| || || | | Sbjct 132103 GTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 132044 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | ||||||| |||||||||| || | ||| | ||||| || Sbjct 132043 CCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 131984 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| |||||| ||||||||| || || || | || |||||||||| | Sbjct 131983 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 131924 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | ||||||||||| ||| || |||| || || || |||||| | Sbjct 131923 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAATG 131864 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | || ||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 131863 TTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 131804 Query 65136 CATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 65190 || | || | | | ||| || | ||||| || ||||| ||||| |||| Sbjct 131803 CAGAGACCCATATCCACAAGGT-----CTTTGAGGAGCCATGGGTTAACAACTTGGAATT 131749 Query 65191 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 65250 |||||| | || | || | ||| || || ||||| ||||| | | | || || Sbjct 131748 CTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGA 131689 Query 65251 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 || | ||||| | ||| ||||| ||||||||||| || | | || | || Sbjct 131688 AACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAA 131629 Query 65311 GACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 65370 |||| | |||| | || | || ||||||| ||| | ||| || || | Sbjct 131628 TTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGA 131569 Query 65371 CNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTA 65426 | ||| || ||| || ||||| | | ||| ||| || Sbjct 131568 CGCCCCACATGTCATATTGGAGTTCACCCTTGGAGACTGGGG----AGCCTTGATAGGTT 131513 Query 65427 TCGTATGGTCC---TTCCTTCTCAG-CTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 ||||| || || |||||| || || | ||| | || || ||| ||| || Sbjct 131512 TCGTACGGGCCAAGTTCCTTTGCAATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTA 131457 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 |||||| ||||| |||| | || || | |||| ||||| | |||||||||| | Sbjct 131456 AATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAATGGAAGAC 131398 Query 65542 TTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 ||||| || ||| || || || | ||||||||||||| | ||||||||| || | Sbjct 131397 G-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGGTGACG 131340 Query 65600 CTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 ||| | |||| | ||||| | | |||||||| || ||||| || || || || | Sbjct 131339 GAAATT-GCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCA 131281 Query 65659 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCAT 65715 ||||| || | |||| ||| || || | || || | |||||| | || ||||| Sbjct 131280 AGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCAT 131221 Query 65716 CTATT---AC-AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 || || ||| || | | |||| || |||| ||||| || ||||||| Sbjct 131220 TCATGTTGACGAAAGTTGGTAGA-GCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCT 131162 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | | || | | ||||| ||||| | || | || || || | || Sbjct 131161 GGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTC 131102 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 | ||| || ||||| ||||| || ||||| || ||||| ||||| ||| | || || || Sbjct 131101 TTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCG 131042 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 65951 | |||| || | ||| | | ||| | | ||||||| || || ||| | | Sbjct 131041 GTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCC 130985 Query 65952 TTTTCTC---TTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 ||| || |||| || | ||| | | | |||||||| || || |||||| Sbjct 130984 TTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTG 130927 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 66066 |||| ||||| ||||||| || ||||| | | ||| ||||| | | | || || | Sbjct 130926 CCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCT 130867 Query 66067 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCG 66125 |||| || | |||||||||||| | || ||| || | ||| | | | | ||| || Sbjct 130866 TCATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGCGCACGAACTTCTTCC 130808 Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || || || ||||| || ||| | | || ||| |||||| || || | | Sbjct 130807 TTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGG 130748 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || | || | | ||||| |||||||| || || ||||| | ||||| || ||||| Sbjct 130747 TAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTG 130688 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || |||||| | ||| |||| |||||||||||| | || ||||| |||| ||| || Sbjct 130687 TTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTAT 130628 Query 66306 CTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 ||| | ||||| || | ||| ||||| || || || || | || ||||| Sbjct 130627 GCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATC 130568 Query 66366 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 66425 | || || || || ||||| ||||| || || ||||| || ||| |||||| | Sbjct 130567 ATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATG 130508 Query 66426 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 || || || || | ||| | ||| |||||| ||| | || || ||||| Sbjct 130507 AGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCA 130448 Query 66486 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCA 66544 || ||||| | || | || | | ||||| || || ||||| || ||||| || Sbjct 130447 TGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCA 130388 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 | ||||| || || || |||||||| | ||| || ||||| | ||| | | ||| Sbjct 130387 CCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCC 130329 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 66662 | | || | || ||| || | || ||||| || || || | ||| |||| Sbjct 130328 ATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAGTTGAA 130269 Query 66663 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 66722 | || | || || | |||| | |||||||||| |||| || | | | || || Sbjct 130268 A--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCATTCG 130211 Query 66723 ATGGTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 66781 | || | |||| ||| || ||||| ||| |||||||| || || ||| | | | Sbjct 130210 AAAGT-TTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTATATTGGTA 130152 Query 66782 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 66841 |||||| || || | ||| |||| || |||| |||||| || ||||| || || Sbjct 130151 TAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTGACACTGC 130092 Query 66842 TATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 || | ||| |||| |||||||||||| ||||| Sbjct 130091 AATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 120 bits (132), Expect = 4e-22 Identities = 334/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| || || || | ||||||||||| || || || || | || || || || Sbjct 449021 TTTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTC 448962 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| | || || | ||| | ||||| || | Sbjct 448961 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACGAGG 448902 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| ||||| || || || ||| ||||| | | | ||||| || | || Sbjct 448901 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCCAAGAGG 448842 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 448841 GCGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 448782 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | || | || || || | | | | ||| || | | ||||||||| Sbjct 448781 TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAAAAGGAGGCATGCGAAA 448722 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 ||| ||| ||||| ||||| | || | ||||||||| || |||||||| | ||| Sbjct 448721 TCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATG 448662 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || |||||||| || ||||| || ||||| || || |||||||| ||||| || || || Sbjct 448661 AGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCTCA 448602 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 36343 || || || || |||| || | | || | | | |||| || ||||| || Sbjct 448601 ACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCATTTG 448542 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 |||||| ||||||||||| || | ||||| Sbjct 448541 ACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 448510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170200217440