Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq1 82.4 6e-11 >seq4 Length=2737121 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||| || || | |||| ||||||||| | ||||| ||||| Sbjct 1682894 CCACCACGGAGACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 1682953 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||| || ||||| || |||||||||||||| |||| || Sbjct 1682954 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGG 1683013 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| ||||||| || | | ||||| || ||| || Sbjct 1683014 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACC 1683073 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || || || || || || || ||||| Sbjct 1683074 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 >seq1 Length=2965994 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | ||||| |||| || |||||| || | ||||||||||| Sbjct 1570101 CCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAG 1570160 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||| || ||||| |||||||| || ||||| |||| || Sbjct 1570161 AGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGA 1570220 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| || | | ||||||| | |||||| Sbjct 1570221 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACC 1570280 Query 43063 TCTACCGTTATAGTTTTTCCGGT 43085 || | || || || |||||||| Sbjct 1570281 TCAAGGGTGATGGTCTTTCCGGT 1570303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368131250328