Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36 244 1e-59 seq9 122 1e-22 >seq36 Length=569963 Score = 244 bits (270), Expect = 1e-59 Identities = 922/1416 (65%), Gaps = 38/1416 (3%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATA 71501 |||||||| |||||||||| | ||||| | |||| ||||| || |||||||||| Sbjct 131458 TAAATGGTCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAATGGAAG 131400 Query 71502 ATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 | ||||| || ||| || || || | |||||||| |||| | ||||||||| ||| Sbjct 131399 ACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGGTGA 131342 Query 71560 CTCTTATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 71618 | ||| | |||| | ||||| | | |||||||| || ||||| || || || || Sbjct 131341 CGGAAATT-GCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTT 131283 Query 71619 GAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCC 71675 | ||||| || | |||| ||| || || | || || | |||||| | || | | Sbjct 131282 CAAGTTTCTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTC 131223 Query 71676 ATCTAT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 || || | | | ||| || |||| || |||| ||||| || ||||||| Sbjct 131222 ATTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTTACAGCAAGCAACCTCATC 131163 Query 71733 AGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 71792 | | | || | | || || ||||| | || | || || || | || Sbjct 131162 TGGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTT 131103 Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 | ||| || ||||| ||||| || ||||| || ||||| || || ||| | || || || Sbjct 131102 CTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTC 131043 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT 71912 | |||| || | ||| | | ||| | | ||||||| || | ||||| | Sbjct 131042 GGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACC 130986 Query 71913 CTTTTCTC---TTTCGTAT-TGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTG 71967 |||| || |||| || | | ||| | | | |||||||| || || || ||| Sbjct 130985 CTTTCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCT 130928 Query 71968 TCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTC 72025 | || ||||| |||||||| || ||||| | | ||| ||||||| || ||| || | Sbjct 130927 GCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCAT--TCTTTTCAACAC 130870 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCC 72084 | ||||| || | |||||||||||| | || ||| || ||||| | | | | || Sbjct 130869 GCTTCATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGCGCACGAACTTCT 130811 Query 72085 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 72144 || || || || || ||||| || ||| | | || ||| | |||||| || || Sbjct 130810 TCCTTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCA 130751 Query 72145 AAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 72204 | ||| | || | | || || |||||||| || || ||||| | ||||| || ||| Sbjct 130750 AGGTAAACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTG 130691 Query 72205 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 72264 || || |||||| | ||| |||| |||||||||||| || ||||| |||| ||| Sbjct 130690 TTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATG 130631 Query 72265 TAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 72324 || ||| | ||||| || || ||| ||||| || || || || | || ||| Sbjct 130630 TATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAG 130571 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || | || || || || ||||| ||||| || || ||||| || ||| |||||| Sbjct 130570 ATCATGGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCG 130511 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 | || || || || | ||| | ||| |||||| ||| | || || ||| Sbjct 130510 ATGAGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAA 130451 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC- 72503 || || ||||| | || | |||| | ||||| || || ||||| ||| ||||| Sbjct 130450 GCATGTGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCA 130391 Query 72504 CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 || | || || || || || |||||||| | ||| || ||||| | ||| | | || Sbjct 130390 TCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTT 130332 Query 72564 GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 72621 | || | || | || ||| || | || ||||| || || || | ||| | Sbjct 130331 GCCATCAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAGTT 130272 Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATA 72681 |||| || | || || | |||| | || ||||||| |||| || | | | || Sbjct 130271 GAAA--TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGACGCAT 130214 Query 72682 TCCATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 || | || | |||| ||| || ||||| ||| |||||||| || || ||| | Sbjct 130213 TCGAAAGT-TTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTATATTG 130155 Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 | ||||||| || || | ||| |||| || |||| ||||| || ||||| || Sbjct 130154 GTATAAATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTGACAC 130095 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || | || ||||||||||||||||| ||||| Sbjct 130094 TGCAATACGAGCAGCTAGAATGGCATAATCGGGATG 130059 Score = 138 bits (152), Expect = 2e-27 Identities = 311/464 (67%), Gaps = 15/464 (3%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||| ||||| || | || || || | ||||||| ||||||||| || || || | | Sbjct 132103 GTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 132044 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | ||||||| |||||||||| || | ||| || | ||||||| || Sbjct 132043 CCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTG-TAGGATCCTTCAT 131985 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || ||| ||||||||| || || || | || |||||||||| | Sbjct 131984 GTGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAAC 131925 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||||||||||| ||| || |||| || || || |||||| Sbjct 131924 AATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAAT 131865 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| ||||||||||| ||||| || | || || || | ||| Sbjct 131864 GTTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGA 131805 Query 71097 CCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAAT 71151 ||| | || | | | ||| || | ||||| || ||||| ||||| ||| Sbjct 131804 CCAGAGACCCATATCCACAAGGT-----CTTTGAGGAGCCATGGGTTAACAACTTGGAAT 131750 Query 71152 TCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTA 71211 ||||||| | || | ||| | ||| || || ||||| ||||| | | || || Sbjct 131749 TCTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTG 131690 Query 71212 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 || | ||||| | ||| ||||| ||||||||||| || Sbjct 131689 AAACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAAC 131646 >seq9 Length=1448665 Score = 122 bits (134), Expect = 1e-22 Identities = 337/514 (66%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| || || || | ||||||||||| || ||||| || |||| || || || Sbjct 449021 TTTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTC 448962 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||| | || || | ||| | ||||| || | Sbjct 448961 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGACTTTGTCGTTACCCAAAGCAACGAGG 448902 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| |||| ||| || || ||| ||||| | | | ||||| || | || Sbjct 448901 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCCAAGAGG 448842 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||||||||| | || | ||||||||||| || || || || || || | | Sbjct 448841 GCGCAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAATGACA 448782 Query 42014 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 |||| || | || || || | | | | ||| || | | ||||||| Sbjct 448781 --TCTTGGACGGCTTGTTTGGATGGGCGGTGCTTGAGATGAGAGAAAAGGAGGCATGCGA 448724 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 ||||| ||| ||||| || || | || | ||||||||| || |||||||| | || Sbjct 448723 AATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCA 448664 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | || |||||||| || ||||| || || || || || |||||||| |||||||| || | Sbjct 448663 TGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCT 448604 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACT 42248 | || || || || |||| || | | || | | | |||| || ||||| | Sbjct 448603 CAACAGCGGCGAATGCAACGAGACGTTGAGCAAAGGTAGAGTTCTTGTCTTGAATCCATT 448544 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | |||||| ||||||||||| || | ||||| Sbjct 448543 TGACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 448510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136549000160