Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq4 107 2e-18 >seq1 Length=2965994 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| || | ||||| | || || ||||| || Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| |||||||| || ||||| ||||| || Sbjct 1570039 GACACCATCGACAACGTGAAGGCTAAGATTCAA-GACAAAGAGGGCATTCCCCCTGATCA 1569981 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || || ||| | || |||| |||||| | ||| ||||| Sbjct 1569980 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAA 1569921 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || ||||||| || || Sbjct 1569920 CATCCAAAAAGAATCGACTTTACATTTGGTTCT 1569888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || |||||||| | || || || || || Sbjct 1569871 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACATTAGAGGTAGAATCTTCA 1569812 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| || || || || ||||||||||| || Sbjct 1569811 GATACTATTGATAATGTTAAGGCCAAGATTCAA-GATAAGGAGGGTATTCCACCTGATCA 1569753 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || || || || |||| | ||| | |||||||| Sbjct 1569752 ACAACGATTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACTCTTTTGGATTACAA 1569693 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||| ||| | || || ||||| Sbjct 1569692 CATTCAAAAGGAAAGCACCTTGCACTTGGTGCT 1569660 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 ||||| || ||||||| | || || ||||| ||||||||||| || || ||| Sbjct 1570303 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATCGA--CAATGTCAAGG 1570246 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| || || || || ||||| || |||||||| || | ||||| ||||| | Sbjct 1570245 CCAAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAA 1570186 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 | ||| | || |||| ||| || | ||||||||| ||||| || || || || || | Sbjct 1570185 AGCAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCC 1570126 Query 25201 ATTTAGTGCTAAGGCT 25216 | || || || || || Sbjct 1570125 ACTTGGTTCTCAGACT 1570110 >seq4 Length=2737121 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| | ||||| |||| || ||||| || Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| || || || ||||| ||| Sbjct 1683060 GACACCATCGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAGGGAATCCCACCCGAC 1683004 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || ||||| || ||| | || |||| ||||| | ||| ||| Sbjct 1683003 CAACAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTAC 1682944 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || ||||| || ||||| || || |||||| || Sbjct 1682943 AACATCCAAAAGGAGTCCACTCTTCACTTAGTGTTA 1682908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326331145540