Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 194 3e-44 seq1 167 4e-36 seq3 129 1e-24 >seq4 Length=2737121 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || || ||||| || |||||||| ||||||||||| || ||||| Sbjct 1682894 CCACCACGGAGACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 1682953 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || | || |||||||||||||| Sbjct 1682954 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGG 1683013 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| || ||||| ||||||||||| | || || || Sbjct 1683014 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACC 1683073 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1683074 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 >seq1 Length=2965994 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || ||||| || | |||||||| | ||| || ||||| ||||| | Sbjct 1569637 TTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGT 1569696 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| | || || || ||||| || |||||||| |||||||| || | || |||||| | Sbjct 1569697 AATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGAT 1569756 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| || ||||| ||||||||||| ||||| || || || || |||| | Sbjct 1569757 CAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATTATCAATAGTATCTGAAG 1569816 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || || |||||||| ||||| || | ||||||||| || || ||||| Sbjct 1569817 ATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| |||| || || |||||||||||||| || ||||| Sbjct 1569873 CCACCACGGAGACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGTAGTCGGAA 1569932 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | |||||| || || ||| Sbjct 1569933 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGGGGA 1569992 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||||||||| ||||| ||| ||||||||||| | ||| || || Sbjct 1569993 ATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCAACC 1570052 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 1570053 TCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 Score = 145 bits (160), Expect = 1e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | |||||||| || || ||||| || || ||||| ||||||||| Sbjct 1570101 CCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAG 1570160 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || | | |||||||||||| ||| Sbjct 1570161 AGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGA 1570220 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||| ||||| ||||| |||||||| ||||| ||||| ||| || || || Sbjct 1570221 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTC-GCTGGACTCGAC 1570279 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| ||||| || Sbjct 1570280 CTCAAGGGTGATGGTCTTTCCGGT 1570303 >seq3 Length=2936196 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| ||||| || || || | || || || | ||||| || ||||| || Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||| ||||| ||||| || || |||||||| ||||| ||||| || ||| Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| |||||||||||||| Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618759591520