Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq4 95.1 1e-14 >seq1 Length=2965994 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||||| || ||||||||||| |||||||| ||| Sbjct 1569870 ATACCACCACGGAGACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGTAGTCG 1569929 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| |||||||| |||||||| |||| ||||| ||||| || || Sbjct 1569930 GAAAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGG 1569989 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| |||||||| |||||| || | | || | |||||| | || || Sbjct 1569990 GGAATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCA 1570049 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| || ||||| ||||| || || || || ||||| Sbjct 1570050 ACCTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | ||| || || | ||||| || || ||||||||||||||| Sbjct 1570098 ATACCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCG 1570157 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| |||||||| || || ||| | || | ||| |||||||| || Sbjct 1570158 GAGAGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGG 1570217 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||||| || | | || | |||||| |||| ||| Sbjct 1570218 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCG 1570277 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || || ||||| Sbjct 1570278 ACCTCAAGGGTGATGGTCTTTCCGGT 1570303 >seq4 Length=2737121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || ||||| || | || || || ||||| |||||||| ||| Sbjct 1682893 ACCACCACGGAGACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 1682952 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 1682953 AAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGG 1683012 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||| ||| | | || | |||||| | || || || Sbjct 1683013 GATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAAC 1683072 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | |||||||| || || || || || || ||||||||| || Sbjct 1683073 CTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 1683124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132781957392