Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-17 seq3 89.7 1e-12 >seq9 Length=1448665 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||| || ||||| ||||||| |||| | |||||| | ||| ||| |||| ||| | Sbjct 448784 TCATTACCGAAGCCGTTGAAATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCGCCC 448843 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 | | |||||||||||| |||||| || ||||| || ||||| || || || | Sbjct 448844 TCTTGGGCATGAACTCTACTCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCC 448903 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 || | || | ||| | || ||||| ||||| || ||||| || | ||| |||||| Sbjct 448904 TCGTTGCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAACCCATTCGACTTCATGGAGA 448963 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||| | || || || ||||| ||||||||| | || | ||||| ||| Sbjct 448964 ACATTTCCTTGGCTGGCAAGACCAACTTTTTCGAAAAGAGAGTTGGAGATTACCAA 449019 >seq3 Length=2936196 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||| ||||||||||||| || || || || ||| |||| ||||| | ||| ||| Sbjct 1216113 AGTCTTGTGAAAATATAACGGGCGCTAGCAGCATCGCTACCTCCCTGAAGTCTGCTACCA 1216172 Query 297491 AACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 || | || ||| | ||||| | || || |||||| |||| || || ||| Sbjct 1216173 AAATTTCCACTTGGCTCGAGACAGTTAACATTGTTCGAGCCGACAAAATCTTGAGCGAGG 1216232 Query 297551 TTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT---CTGCA 297607 || |||||| ||||| || || || |||||||||||||| | | || ||| Sbjct 1216233 CCAACAATGGTCATTTGCATCGAAGCCTCACCATGGTGATAGGC-CGAGACTTGACTG-- 1216289 Query 297608 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA 297667 || ||||| || | |||| |||| ||| | || | ||||||||||| | | Sbjct 1216290 ACATAACCAGCGAGTTCAACAACTTTCATGTCATTTGTAAGGTTGCGCTTGAAGCAAGCA 1216349 Query 297668 TATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATG 297718 | || ||||||||||| ||| |||| ||| |||| ||| || |||||| Sbjct 1216350 TGCATAACTTTCCGTTGTCCAGGCTTGAGACCGTCAATGACGGAAGGAATG 1216400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875534714600