Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq4 95.1 9e-15 >seq1 Length=2965994 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| ||||||||||| ||| |||| | || || || || || || ||| | Sbjct 1569681 TCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAG 1569740 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| || ||||| || |||||| || ||||| || ||| ||| || ||| | Sbjct 1569741 ATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATTA 1569800 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || |||||||| | |||||| ||||| || ||||| || || |||| || || ||| Sbjct 1569801 TCAATAGTATCTGAAGATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGACA 1569860 Query 15166 AAAATTTGCATA 15177 || ||||||||| Sbjct 1569861 AAGATTTGCATA 1569872 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | ||| || || |||||||| || || || |||||||||||| | Sbjct 1570101 CCACCACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAG 1570160 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||| || || ||| | |||||||| ||||||||| ||| Sbjct 1570161 AGGGTTCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGA 1570220 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || || ||| || ||| | || ||||| ||||| || || Sbjct 1570221 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACC 1570280 Query 15130 TCTAAGGTAATGGTTTTACCTGT 15152 || | ||| ||||| || || || Sbjct 1570281 TCAAGGGTGATGGTCTTTCCGGT 1570303 >seq4 Length=2737121 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| || || || ||||| |||||||| ||| Sbjct 1682894 CCACCACGGAGACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 1682953 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | ||| || || ||| | ||||| |||||||||||| ||| Sbjct 1682954 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGG 1683013 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || ||| ||| ||| | || || || || | || || Sbjct 1683014 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACC 1683073 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || || || || || || || ||||| Sbjct 1683074 TCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390623594060