Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-22 seq4 96.9 8e-15 >seq1 Length=2965994 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 |||||| || ||||||| ||||||||| | | ||| | ||||| || || ||||| || Sbjct 1569902 AGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACC 1569961 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || ||||| ||||| || || || || ||| || ||| || |||||||| ||| Sbjct 1569962 AGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTT 1570021 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 |||| |||| |||||| | || || || || || ||||||||||| || |||||||| Sbjct 1570022 CACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGT 1570081 Query 199612 TTTCACAAAAATTTG 199626 || || || ||||| Sbjct 1570082 CTTAACGAAGATTTG 1570096 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 |||||||| | |||||| || | ||| || ||||| |||| |||||||||||||||| Sbjct 1569681 TCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAG 1569740 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | || || || || || ||| || || || |||||||| ||| || Sbjct 1569741 ATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATTA 1569800 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || |||| | |||||| || || ||||| ||||| || || | || || ||| Sbjct 1569801 TCAATAGTATCTGAAGATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGACA 1569860 Query 199619 AAAATTTG 199626 || ||||| Sbjct 1569861 AAGATTTG 1569868 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || | |||||| || |||||||| || | |||||| || | | || Sbjct 1570107 CGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGTT 1570166 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || |||||||||||||| || | ||| || ||||| || |||||| Sbjct 1570167 CGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCCC 1570226 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| ||||| | | || || || | Sbjct 1570227 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACCTCAAGG 1570286 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 1570287 GTGATGGTCTTTCCGGT 1570303 >seq4 Length=2737121 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||||||||||| ||||||||| | | || | ||||| || || || Sbjct 1682917 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTG 1682976 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||||||||| | ||||| ||||| || ||||| || || || ||||| Sbjct 1682977 CTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTT 1683036 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || |||| |||||| | | || || || | ||||| || || ||||| Sbjct 1683037 GGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTTTTGCCCGT 1683096 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || Sbjct 1683097 GAGGGTCTTGACGAAGATCTG 1683117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916826841172