Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq1 109 5e-19 seq3 105 7e-18 seq9 100 3e-16 >seq4 Length=2737121 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||||||||| |||||| |||| || ||| | | Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| |||||||| || |||||||| Sbjct 1683060 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 1683001 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || || || || || | |||||||| |||||||||| Sbjct 1683000 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 1682941 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || || ||| | ||| Sbjct 1682940 ATCCAAAAGGAGTCCACTCTTCACTTAGTGTTACGT 1682905 >seq1 Length=2965994 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || ||||| | || || ||| | | Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||||||||| |||||| | || || Sbjct 1570039 GACACCATCGACAACG-TGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCA 1569981 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || || || || || || || | ||||| || ||||||||| Sbjct 1569980 ACAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAA 1569921 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| |||| | |||||||| || ||| Sbjct 1569920 CATCCAAAAAGAATCGACTTTACATTTGGTTCTTCGT 1569884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||||||| | || |||||| ||| ||||| | | | | || | Sbjct 1570303 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATCGACAATGTCAAGGCC 1570244 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || |||||||||||| |||||||||| || | |||| ||| || || Sbjct 1570243 AAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAAAG 1570184 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | || |||||| ||| |||||||| || ||||| | || || || Sbjct 1570183 CAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCCAC 1570124 Query 38448 TTGGTGCT 38455 ||||| || Sbjct 1570123 TTGGTTCT 1570116 >seq3 Length=2936196 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 1398663 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 1398722 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | |||| | || |||| |||||||||||||||||| |||| ||||| || | Sbjct 1398723 GACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCCGATCAACAACGTTTG 1398782 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || || || || |||| || || || || ||||||||||||||| Sbjct 1398783 ATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCTTTCAGATTACAACATCCAAAAG 1398842 Query 38433 G 38433 | Sbjct 1398843 G 1398843 >seq9 Length=1448665 Score = 100 bits (110), Expect = 3e-16 Identities = 188/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || |||| ||||| | ||| ||||| |||||| || Sbjct 448405 GTATGTGTCGATGAGAAGAGAGTATGTTTCGGAGTGGATGTTTTCCATCATGATTTGGAA 448346 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || || || | || ||||| ||| | |||||||| || Sbjct 448345 ACCGTAGAAGCATCGTGCTTCTGGAATTTGAACTTCACCGCTGAATCTCTCGACCAAGTT 448286 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||| || || || ||| || ||||| || || || ||||| |||||| | || Sbjct 448285 CTCGTTTACAATTCCATCGGATGCTGCGAAGAATGCGAGAACGTGGGAGATGAAGTAACG 448226 Query 133347 CTCGTTGTCGTTCAAGC---GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| || | | | ||| ||| | ||||| |||| || | ||| || Sbjct 448225 CTCGTCGTCATTGAGTCTATTATTCCAATCGTGAAGATCCTTTGACAAATCAATCTCTTC 448166 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || ||||| || || |||||||| Sbjct 448165 TGCGGTCCAGAAAGAGGCCTCTGCCTTCTTGTACAT 448130 Score = 100 bits (110), Expect = 3e-16 Identities = 296/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || | || || ||||| || || || || ||||||||||| | Sbjct 449021 TTTTGGTAATCTCCAACTCTCTTTTCGAAAAAGTTGGTCTTGCCAGCCAAGGAAATGTTC 448962 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT---CAGGTCGACG 132720 ||| || || || |||||||| | |||||| ||| || || | || | ||| Sbjct 448961 TCCATGAAGTCGAATGGGTTGGCAGACTTGTAGA-CTTTGT--CGTTACCCAAAGCAACG 448905 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 || || | || || |||||||| ||||||||| |||| | | | | | | || || Sbjct 448904 AGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGAGTAGAGTTCATGCCCAAG 448845 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 | |||| || || || ||||| | || ||| ||||| | || || ||||| | Sbjct 448844 AGGGCGCAA-GGAAGAGCCTCGGTCAAGAATTCTTGTTCGATTTCAACGGCTTCGGTAAT 448786 Query 132840 GATTTCCCTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 || || ||| | | | | ||| || || | ||| ||| | | ||| | Sbjct 448785 GACATCTTGGACGGCTTGTTTGGATGGGCGGT-GCTTGAGATGAGAGAAAAGGAGGCATG 448727 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | || ||| || | || ||||| | ||| |||||||||||| ||| || | || | Sbjct 448726 CGAAATCGGTGTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAG 448667 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||||| || || || |||||||| || |||| |||||| || || ||||||| | Sbjct 448666 CCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATAC 448607 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCG 133046 |||| || || ||||| || || || || Sbjct 448606 CCTCAACAGCGGCGAATGCAACGAGACG 448579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170824317440