Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq58 105 3e-17 seq1 105 3e-17 seq4 96.9 1e-14 seq3 89.7 2e-12 >seq58 Length=269280 Score = 105 bits (116), Expect = 3e-17 Identities = 189/276 (68%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| ||||||||||| ||||| ||| | ||||| ||||| || || ||||| || || | Sbjct 100760 TTACCGTTCCCGCTTACTTCAACGATTCCCAACGTCAAGCCACCAAGGATGCTGGTCAAA 100819 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||||| || ||||| || | | || || || || || || ||||| || || | Sbjct 100820 TTGCAGGTTTGAACGTTCTCAGAGTCGTCAACGAGCCAACGGCTGCCGCTCTCGCTTACG 100879 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | | ||| || | || || || | |||| || | ||||| ||||||| Sbjct 100880 G-TTTGGAGAAGGA--------CGAGGACAAGATTATTGCTGTCTACGATTTGGGTGGAG 100930 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | ||| |||| || || || ||| || | || || || ||||| || | || | Sbjct 100931 GTACTTTCGATATCTCCGTCCTCGAGATTCAAAAGGGTGTCTTCGAAGTCAAATCCACTA 100990 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 | || || ||||| | |||||||||||| | |||| Sbjct 100991 ACGGAGACACTCACTTGGGAGGTGAAGATTTCGATA 101026 >seq1 Length=2965994 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || | || || ||||| || Sbjct 1569871 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACATTAGAGGTAGAATCTTCA 1569812 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| || |||||||||||||| || ||||| ||||||||| Sbjct 1569811 GATACTATTGATAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATTCCACCTGATCAA 1569752 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || || || | || ||||| |||||| | |||||| || Sbjct 1569751 CAACGATTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACTCTTTTGGATTACAAC 1569692 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 1569691 ATTCAAAAGGA 1569681 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||||||||| |||||||| || || ||||||||||| |||||| | || || Sbjct 1570243 AAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAAAG 1570184 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 |||||||| ||||| |||| | | ||||| || ||| | ||||| | || || ||| Sbjct 1570183 CAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCCAC 1570124 Query 391254 TTAGTATTAAGACT 391267 || || | ||||| Sbjct 1570123 TTGGTTCTCAGACT 1570110 Score = 96.9 bits (106), Expect = 1e-14 Identities = 238/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACT-AAAATGAAAGAAACAGCAGAACAATATAT 451302 || ||||||||||| ||||| | |||| | || |||| ||| ||||| || || | Sbjct 1666141 CCAGAAGAAATTTCTTCTAT-GATCTTGGTCAAGATGAGAGAGACAGCTGAGGCTTACCT 1666083 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 ||| | || | | || || | || || || ||||| |||| ||| ||||||| Sbjct 1666082 TGGAGGAACTGTCAACAACGCCGTCGTCACAGTCCCAGCTTACTTCACCGATTCACAACG 1666023 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||| || || || || || | |||||||| | || ||||| || || || || || Sbjct 1666022 TCAAGCTACCAAGGACGCTGGTCTCATTGCTGGCCTCAACGTTCTCCGTATCATCAACGA 1665963 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaa 451481 |||||| |||||||| | || || || | ||| | | |||| | | || | Sbjct 1665962 ACCTACCGCAGCTGCCATTGCTTACGG-TTTGGACA---AGAAGATTGAGGGTGAGCGTA 1665907 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | || | | || ||| |||||||||||||| ||| |||| | | | ||||||| Sbjct 1665906 ACGTTCTCATCTTCGATCTTGGTGGAGGAACTTTCGATGTTTCTCTCTTGACCATTGAAG 1665847 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 | || | || || || ||| | ||| |||||| ||||| | || ||||| || Sbjct 1665846 AGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGACACTCACTTGGGTGGTGAGGA 1665792 Score = 87.8 bits (96), Expect = 7e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || ||| | || ||||| ||||| Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || |||||||| || || || ||||| ||||||||| Sbjct 1570039 GACACCATCGACAACGTGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCAA 1569980 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || || | || || |||||||| ||||| Sbjct 1569979 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGG 1569942 >seq4 Length=2737121 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || |||||||| || || || ||||| || || Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | ||| || || ||||| ||||| ||||| || || || ||| Sbjct 1683060 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 1683001 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || ||||| || ||||| | || | | || || || Sbjct 1683000 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 1682941 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | ||||| | || ||||||||||| ||| Sbjct 1682940 ATCCAAAAGGAGTCCACTCTTCACTTAGTGTTA 1682908 >seq3 Length=2936196 Score = 89.7 bits (98), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || ||||| Sbjct 1398657 AATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGAC 1398716 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | || || | |||| || || ||||| || || |||||||| || ||||||||| Sbjct 1398717 ACTATCGACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCCGATCAACAA 1398776 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || |||||||| || || | ||| | | ||||| || || Sbjct 1398777 CGTTTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCTTTCAGATTACAACATC 1398836 Query 391233 GATAAGG 391239 | |||| Sbjct 1398837 CAAAAGG 1398843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975710400810128