Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36 165 1e-35 seq1 86.0 7e-12 >seq36 Length=569963 Score = 165 bits (182), Expect = 1e-35 Identities = 426/637 (67%), Gaps = 23/637 (4%) Strand=Plus/Minus Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 || ||| ||||| ||| | |||| || ||||| | ||||||||||| |||||||| Sbjct 130905 GGCACATAAGAGT--CCATTCTCCATTCTTTTCAACACGCTTCATGAACAAATCAGGAAT 130848 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||||| || |||| || || || |||| | ||||| | ||| ||||| |||||| Sbjct 130847 CCACAAGGCATAGAAGAGATCGCGCGCACGAACTTCTTCCTTACCGTGGTTTTTGCGTAG 130788 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTT 110756 || | ||| || | | ||| | |||||||| || || || ||||| | | || Sbjct 130787 ATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAACGCACC--- 130731 Query 110757 ACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 | |||| ||| | || | |||||| | || ||| ||||| || | ||||| Sbjct 130730 AGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGAAGCAT 130671 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACC-CCTAATTCTGGACTTATTGGCACGAA 110869 |||| ||| |||| ||| | || || ||||| | | | || || | | ||||| | Sbjct 130670 GGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGCAC-CAGTAGCACGGA 130612 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTG 110928 | ||| || | | |||||||||||| || ||| || |||| | ||| | Sbjct 130611 TTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCT-TC 130553 Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 | ||| | || ||||||||||| || |||| || | || || |||||||| || Sbjct 130552 AAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGAA 130493 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | || | | || || |||||| |||||||| || | ||||| || | || || Sbjct 130492 AGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATG--TGTAAAGTACT 130435 Query 111049 TG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAA 111106 || |||||| ||||||||| |||| || | ||| | |||||||||||||| Sbjct 130434 TGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAA 130375 Query 111107 TGGCAACTCGCATGAACATATATTGAGG-CGTTTCGATTAGCTTT-CCATCAACACGCTG 111164 |||||| ||||||| ||| | |||||| |||| || | |||| ||||||| ||| Sbjct 130374 CGGCAACACGCATGATCATTTGTTGAGGACGTTCCG--CAACTTTGCCATCAAGACGTAA 130317 Query 111165 AAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 ||| || ||| |||||||| | || |||||| Sbjct 130316 AAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTAT 130280 Score = 122 bits (134), Expect = 1e-22 Identities = 285/428 (67%), Gaps = 4/428 (1%) Strand=Plus/Minus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || || || | ||| |||||| | | |||||| || | || || Sbjct 132065 ATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTT 132006 Query 109473 GGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACC 109532 | | ||| ||| || ||| | |||||| || ||||| |||||||| ||| ||| Sbjct 132005 GCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACC 131946 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||||||||| ||||| | | || ||| ||||||||| ||||||||||| | Sbjct 131945 ACGATCAGCAGCCATTTGAACAATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAG 131886 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 ||||| ||| | ||||||| |||||||||||| || |||||| | | || Sbjct 131885 GGCTTTGATGTCAGCTGGAATGTTGGGGATGTTTTGAATCGATCCACCATCGGCAATGAT 131826 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGC 109710 | | |||||| | | ||||||||||| | | || || | | || ||| Sbjct 131825 ACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCCACAAGGTCTTTGAGGAGCCATG- 131767 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||| || || ||||| ||||| || || || ||||||||| | || || Sbjct 131766 -GGTTAACAACTTGGAATTCTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATAT 131708 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 ||||||||||| || ||| || |||||||||| ||| ||| || ||||| || || Sbjct 131707 GGTTCGAAACATTCGTTGAAACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCA 131648 Query 109831 ATGAGAAG 109838 | |||||| Sbjct 131647 ACGAGAAG 131640 >seq1 Length=2965994 Score = 86.0 bits (94), Expect = 7e-12 Identities = 275/419 (66%), Gaps = 27/419 (6%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 || |||||||| || || | ||||| | ||||| | ||| | ||| ||| | ||| Sbjct 328289 TCAAAACGACCAGGCCGCATAAGAGCCTTGTCAAGTACGTCGGGTCTGTTGGTACCAGCA 328348 Query 11566 ATGACTACAAT--GC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || ||||| || ||||| ||| |||||| ||||| || || | || || ||| Sbjct 328349 AGAACAACAATTTGCTCAGTCG---TGTTGAAACCATCCATCTCAGTTAAAATTTGATTG 328405 Query 11623 ATCGTCTGTTCACGCTCATCGTT---------GGAGGGCATACCACC-----TGCCGAAC 11668 | || || || |||||||| |||| || || || |||| || Sbjct 328406 AGTGTAGCCTCCCGTTCATCGTTTCCACCTCCGGAGA--AT-CCGCCAGATTTGCC--AC 328460 Query 11669 GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | ||| || | ||| || |||||||| ||||||| |||||| || | | || Sbjct 328461 GGGACTTTCCAATAGCATCGATCTCATCAATGAATATGATACATGGAGTACTTTTTCTTG 328520 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 || |||| || || || || | | ||||||||||| ||||||||||| ||||| | Sbjct 328521 CCATGGCGAAGAGGTCCCGGACTCTCGATGCTCCAACACCAACGAACATCTCCACGAACT 328580 Query 11789 TTGCGGCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | || ||||| || ||| || || | ||| |||||||| | || || || Sbjct 328581 CGGAACCACTGACACT-AAAGAATGGTACTTGAGATTCACCAGCTGTTGCCTTTGCTAGT 328639 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || ||||| ||||| |||| ||||| | || || ||||| || || || ||||| Sbjct 328640 AATGTTTTACCAGTACCTGGTGGACCAGATAAAATAGCACCACGAGGAATTTTAGCACC 328698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973673544800