Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36 262 5e-65 seq9 105 8e-18 seq21 91.5 2e-13 >seq36 Length=569963 Score = 262 bits (290), Expect = 5e-65 Identities = 1183/1834 (65%), Gaps = 73/1834 (4%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| ||| || | ||||||||| |||||||| | || |||||| | | |||| Sbjct 132079 GCCATAGTACGTAAATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGC 132020 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 ||||| | || |||| ||| || ||| | |||| || ||||| |||| || Sbjct 132019 ATAGATGTGATCTTGCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGA 131960 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCC 105758 || || || |||||| | || ||||| | || | | ||| | || |||||| Sbjct 131959 TCGATAAATGCACCACGATCAGCAGCCATTTGAACAA--TTGTTCGTTGAGAAATTTCCC 131902 Query 105759 ACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAAC 105818 | || || ||| || ||||| ||| |||| || | | ||| |||||||| || | Sbjct 131901 AAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAATGTTGGGGATGTTTTGAATCGATC 131842 Query 105819 CCCCCGCCTTGACCATGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGA 105875 | || | | | |||| | | |||||| | | ||||| ||||| || | | | Sbjct 131841 CACCATC---GGCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCCACAA 131785 Query 105876 GATCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCA 105932 | || |||| ||| ||| ||| |||| || ||||| || || | | | | Sbjct 131784 GGTCTTTGAGGAGCCATGG--GTTAACAACTTGGAATTCTCCAGCTAGAACACGACGTGA 131727 Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 | |||||||| | || || ||||| || ||||| || ||| | |||||||| || Sbjct 131726 G-TAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGAAACCGAGGATTTGTGAAGTAC 131668 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 || || ||||| ||||| | | ||| ||| |||| || | || ||||||| || Sbjct 131667 TAGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAATTCCGTGTTGCTTGATGGATT 131608 Query 106053 CCTTGAGAACATCCCAGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTG 106110 ||| | | ||||| || | | || || | | ||||||| ||| |||| Sbjct 131607 GCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGACGC--CCCACATGTCATATTG 131550 Query 106111 AAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | ||||||| ||| ||||| || | | | || || || | || | | | Sbjct 131549 GAGTTCACCCTTGGAGACTGGGGAG--CCTTGATAGGTTTCGTACGGGCCAAGTTCCTTT 131492 Query 106169 GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 || | || |||| | || ||| | ||||| || ||||| || || || | || Sbjct 131491 GCAATCTCGACAGATGAGGTCAAGGCA-GCGTGGTAAATGGTCTCGAAAATCTGGATGTT 131433 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCG 106285 | | ||||||||| |||||||||| | || | | | || ||| |||| || Sbjct 131432 GAGGTGCTTGGCTTCTGGCGAATCAAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCA 131375 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 |||||||||||||| | | | ||||||| ||| || | ||| ||||| || | Sbjct 131374 AGACCTTGAACACCAACAGCGATAGGTCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGT 131315 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GAT 106404 || |||||| | || | ||||||| ||| | ||| | |||| ||| | || Sbjct 131314 ACTGGATAATAGTTGATATCAATGATCTTGTTCAAGTTTCTAACGACAA-CTTGGACGAC 131256 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCAT--TGACATACTTTGGAAG 106461 || ||||| |||| ||||| |||| | ||| ||||| |||| | |||| || Sbjct 131255 CTCGTGAAGCTTTTGGAAATCATAAGTTCC---CTCATTCATGTTGACGAAAGTTGGTAG 131199 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 || ||||| ||||| || || ||| |||||| | | |||||| | || || Sbjct 131198 AGCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATCTC 131139 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 ||| ||||||||||| || ||| || || | ||||||||||| ||||| |||||||| Sbjct 131138 TGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCA 131079 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTT 106641 ||||| ||||| |||||| | || | || ||||| || || | || ||||| | | Sbjct 131078 TGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATAGAGTA 131019 Query 106642 CCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCT-CCGCCTCGTACTTTGT 106698 ||| | | | | | | || || | || | ||| | ||| || || || | Sbjct 131018 CCAAAGCTTTTGAGCCTTGATAGTCTTGC---GACCCTTTCCTGCCTTTTCATAACTCTC 130962 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGAC 106757 |||||| || || |||||||| || | || | | ||| || || || | || | Sbjct 130961 GTAGAGAGCCTCGAACTCCTCGCCATAAACATCTGCCAAACCAGG-GCATTCATTGGGGC 130903 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | ||||| ||||| ||| || ||||| ||||||||||| | || |||||||||| Sbjct 130902 ACATAAGAGTCCATTCTCCATTCTTTTCAACACGCTTCATGAACAAATCAGGAATCCACA 130843 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 106877 || | |||||||| | ||| | ||||| | ||| ||||| |||| |||| Sbjct 130842 AGGCATAGAAGAGATCGCGCGCACGAACTTCTTCCTTACCGTGGTTTTTGCGTAGATCAA 130783 Query 106878 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTT 106933 | ||||| | | ||| || |||||||||||||| || || || | | || | || Sbjct 130782 GAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAACGCACCAGGACGTT 130723 Query 106934 CGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 106993 | ||| |||||| ||||| | || ||| ||| || || |||||||| |||| | Sbjct 130722 TG-TTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGAAGCATGGGAACA 130664 Query 106994 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 107053 ||||||| || | || || || || | ||| ||| || | | || || Sbjct 130663 ATACCATTGGAATTTCCGTTGGTACC-------GGCGATGTAT--GCACCAGTAGCACGG 130613 Query 107054 A---TGTGCAT------CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | |||| || |||||||| || || ||||||||| ||||| | | Sbjct 130612 ATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 130553 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 | ||| | |||||||| | || ||||||||| || |||| ||||||||| || Sbjct 130552 AAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGAA 130493 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 | || | | ||| ||||| ||| ||||| ||||| | || || | || ||| | Sbjct 130492 AGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATGTGT-AAAGTACTT 130434 Query 107225 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 | |||||| || |||||| || | || || || || || ||||| || || | Sbjct 130433 GTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAAC 130374 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 ||| |||||||| | ||| | ||| || |||| | ||||||| || ||| ||| Sbjct 130373 GGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCCATCAAGACGTAAAAG 130314 Query 107344 ATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||| | || ||||||||| || | || ||||| Sbjct 130313 ATATGATC-GCTCAAGGGTCTTAAATCCGAAGTA 130281 >seq9 Length=1448665 Score = 105 bits (116), Expect = 8e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||||||||| || || ||||| || ||||| || |||||| || || | ||||||||| Sbjct 448716 GTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATGAGACC 448657 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | ||| || || ||||||||||||||||| ||| Sbjct 448656 ACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCTCAACAGC 448597 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| || || | || |||| ||| || |||| || |||||| | Sbjct 448596 GGCGAATGCAACGAGACGTTGAGCAAAGG---TAGAGTTCTTGTCTTGAATCCATTTGAC 448540 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||||| | |||||||||| ||| || || || Sbjct 448539 AGCCCAGTCGGCCTTCTTCTTAATGCAAGGAAC 448507 >seq21 Length=916854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || | || ||||| ||||||||||| || ||| ||| | |||||| | Sbjct 281363 ATGGCCGCATCGCCCCACGTTCCGGTCTCGCCTCCAAACATATGATTGATACTGGTGCCG 281304 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || || | || |||| ||| |||| ||||| | ||||| || ||||| || | Sbjct 281303 GTGTAATCGACGCTGATTATAGGGGTCAAGTAAAAGTACTCCTCTTTAACCACGGCGAAA 281244 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 155224 | || | |||||| ||| | || ||||| | ||||| | | | ||| | | | | Sbjct 281243 AGGATTATGAGGTGAAGGAGGGCGATCGTGTTGCACAGTTGATTTTGGAGAGGATTTATA 281184 Query 155225 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGGGTGGATTTG 155284 |||| || || |||| | ||| | ||||||| | ||| |||| ||| || |||| Sbjct 281183 CACCTGAGGTCACGGAAGTCTTGGTTTTGGAAGAGAGTGCGAGGGGTGAGGGGGGTTTTG 281124 Query 155285 GATCTACTGG 155294 || |||||| Sbjct 281123 GAAGTACTGG 281114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978469575840