Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq4 140 7e-28 seq3 107 4e-18 seq36 84.2 5e-11 >seq1 Length=2965994 Score = 159 bits (176), Expect = 8e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| || ||||| |||| |||||| | ||||| || || |||||||| Sbjct 1569902 AGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACC 1569961 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || |||||||| |||||||| || || |||||||| |||||||||||||| || ||| Sbjct 1569962 AGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTT 1570021 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| || ||||||||||| || || || | || | ||||||||| || | ||| Sbjct 1570022 CACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGT 1570081 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 1570082 CTTAACGAAGATTTGCAT 1570099 Score = 118 bits (130), Expect = 2e-21 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||| | ||| || || ||||| || ||||| |||||||||| || |||| Sbjct 1570110 AGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGTTCGA 1570169 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || || ||||| || ||||| || | ||||||||||| || ||||| || || Sbjct 1570170 CCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCCCTCC 1570229 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGG 195100 || ||||| || || |||||| || || || |||| | | || || || ||||||| Sbjct 1570230 TTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGAC--TCGACCTCAAGGG 1570287 Query 195101 TAACCGTCTTTCCTGT 195116 | | |||||||| || Sbjct 1570288 TGATGGTCTTTCCGGT 1570303 >seq4 Length=2737121 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||||||||||||||| ||||| || ||||| |||| ||| || | ||||| Sbjct 1682909 AACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 1682968 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || |||||||| | ||| |||||||| || || || || || |||||| Sbjct 1682969 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 1683028 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || ||||| || || |||||||||||| || || || ||||| | || Sbjct 1683029 TGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTT 1683088 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 1683089 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 >seq3 Length=2936196 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || |||||||| | |||||| | || || || || ||||| || |||||||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||| || || ||||| || ||||||||||| || || ||| || || || Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||| | ||||| || || | || || ||||| Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 >seq36 Length=569963 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| ||| | |||| | | ||| | ||||||||| | || || | ||||| || ||| Sbjct 130833 TTCTATGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTGAAAAGAATGGAGAATGG 130892 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | ||| | || ||||||||| ||||| | | ||||||||||| ||||||||| Sbjct 130893 ACTCTTATGTGCCCCAATGAATGCCCTGGTTTGGCAGATGTTTATGGCGAGGAGTTCGAG 130952 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAA 160739 |||| || || || || ||||| | |||| Sbjct 130953 GCTCTCTACGAGAGTTATGAAAAGGCAGGAA 130983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477107986372