Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 187 2e-41 seq15 107 2e-17 >seq1 Length=2965994 Score = 187 bits (206), Expect = 2e-41 Identities = 402/593 (68%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || |||||||| ||||| ||| | | | ||| || | | Sbjct 1666469 TATTGGTATCGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAAT 1666410 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| |||||||| ||||| ||| | || || || || | ||| | ||||| || Sbjct 1666409 CGAAATTATCGCCAATGACCAAGGAAACCGTACCACACCTTCCTTCGTTGCCTTCACAGA 1666350 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | ||| | || ||||| || || | |||| | | || || | ||| || Sbjct 1666349 TACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 1666290 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || |||||||| ||| | ||||| | ||||| | ||| | || || || | Sbjct 1666289 TGTCTTCGATGCTAAGCGTCTGATTGGTCGCAAGTTCGCA-GATGCAGAGGTCCAAGCCG 1666231 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291 |||||||||| | |||||| | | || | | | ||||| || ||| || | | Sbjct 1666230 ATATGAAGCACTTCCCTTTCAAGGTCATTGACCGTGCCGGAAAGCCAGTTATCGAGGTTG 1666171 Query 550292 ACTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | ||| ||||| |||||||| ||||||| |||||| | || | Sbjct 1666170 AGT--TCAAGGGCGAGACTAAGCAATTCACACCAGAAGAAATTTCTTCTATGATCTTGGT 1666113 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATA 550408 || |||| | | ||||| |||| |||| | ||| || | | || || | Sbjct 1666112 CAAGATGAGAGAGACAGCTGAGGCTTACCTTGG--AGGAACTGTCAACAACGCCGTCGTC 1666055 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || | || ||||||||||||||||| || || ||||| | ||| Sbjct 1666054 ACAGTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATT 1665995 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || ||||| ||||| ||||| |||||||| || ||||| |||| || || Sbjct 1665994 GCTGGCCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGT 1665935 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || || | | ||| || | ||| || |||||||| ||| ||| || Sbjct 1665934 TTGGACAAGAAGATTGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 1665882 Score = 114 bits (126), Expect = 1e-19 Identities = 336/512 (66%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||||| || ||||||| ||| || || || || || || ||||| || || | Sbjct 1664966 GATGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCCTCGTCGGTGGTTCCACCCGT 1664907 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAA 552203 || || |||| ||| | | | | | ||| ||||| ||||| | ||| | Sbjct 1664906 ATCCCACGTATTC---AAAAGCTCATTACCGATTACTTCAACGGTAAGGAGCCAAAC--A 1664852 Query 552204 AGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 ||| | || || |||||||||||||| || ||||| || | || || || ||||| | Sbjct 1664851 AGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCCATTCTCT 1664792 Query 552262 CTGGACAAACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTAT 552318 | || | ||| || || | || || | || | || | |||||| | || | | Sbjct 1664791 CCGGTGACACTTCATCCAAGTCCACTAACGAGATCCTCCTCCTCGATGTTGCCCCATTGT 1664732 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||| ||| | || || | ||| || ||||| || || || ||||| || || | Sbjct 1664731 CTCTCGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAACACCACCA 1664672 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || || || || ||||| | || || || ||| ||| |||| | Sbjct 1664671 TCCCAACCAAGAAGTCAGAGGTCTTCTCTACCTTCTCCGACAACCAACCTGGTGTTCTCA 1664612 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 | ||| | || || || ||| | || ||| || || || || | | |||| || Sbjct 1664611 TCCAAGTCTTCGAGGGCGAACGTCAACGCACCAAGGACAACAACCTCTTGGGTAAATTCG 1664552 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | ||||| || ||||| || ||||| || || |||||||| |||||||||||| Sbjct 1664551 AGCTCACTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAATTGAGGTTACTTTCGATC 1664492 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | |||||||| ||||| |||| || ||||| Sbjct 1664491 TTGATGCCAACGGAATCATGAACGTCTCTGCT 1664460 >seq15 Length=1132830 Score = 107 bits (118), Expect = 2e-17 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 550380 TTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| ||||||| | | | || || || ||||| ||||| || || || ||| ||| Sbjct 1049562 TTGGGCAAGAAGGTCTCAAAGGCCGTCATCACTGTCCCAGCTTACTTCAACGACAACCAA 1049503 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||||||||| || |||||||| ||| || || ||||| ||||| ||||| ||||| Sbjct 1049502 CGTCAAGCTACCAAGGATGCTGGTGCTATCGCCGGTCTTAACGTTCTCCGTATCATCAAC 1049443 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||| |||||||| |||| || || |||| Sbjct 1049442 GAGCCTACCGCTGCTGCCATTGCTTACGGTCTTG 1049409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029279288494840