Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq3 102 6e-17 >seq1 Length=2965994 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| | || ||||||||||| || ||||| |||| | ||| | | | Sbjct 1569884 ACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCC 1569943 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||||||| ||||| || | ||| |||||||| || |||||||| ||||| Sbjct 1569944 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTT 1570003 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| || || || | || | ||||| || | || || || | ||||| Sbjct 1570004 GTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGAT 1570063 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| | ||| || || || || ||||| Sbjct 1570064 CGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 ||| ||||| || |||||||| | ||||||| |||| ||||| ||||| || || || Sbjct 1569680 TTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAA 1569739 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 ||||| || |||||||| || ||||| || || ||||||||||| || || ||| | Sbjct 1569740 GATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATT 1569799 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 || | ||| || || | ||| || || | |||| || || || || || || || || Sbjct 1569800 ATCAATAGTATCTGAAGATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGAC 1569859 Query 101458 AAATATCTGCAT 101469 ||| || ||||| Sbjct 1569860 AAAGATTTGCAT 1569871 >seq3 Length=2936196 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || |||||||| | | ||| | | | || || | |||||| || || || ||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| ||||||||||| ||||| || ||||| ||||| || || || ||| | || Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||||||||| | || || ||||| |||| || ||||| || Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1398678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276873832812