Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 140 6e-28 >seq9 Length=1448665 Score = 140 bits (154), Expect = 6e-28 Identities = 338/512 (66%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| |||||| ||||| | || ||||| ||| | | ||| | |||| ||| Sbjct 448514 GCATTAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGA-CAAGAACTCTACCTTT 448572 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | || || || || || || ||||| ||||| ||||| ||| || || || || Sbjct 448573 GCTCAACGTCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGATCTTTCGCA 448632 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||||||| || || |||| | || || ||| |||||||| ||| Sbjct 448633 TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGACTCACCTTCTCCAACGAACTC 448692 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | | ||||| |||||||||| ||||| || ||||| || | | | | | | Sbjct 448693 ATCTCCCGTGACGAAGGTCTCCACACCGATTTCGCATGCCTCCTTTTCTCTCATCTCAAG 448752 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | || | || || || | ||||| | | |||| | || || || || ||||| Sbjct 448753 CACCGC---CCATCCAAACAAGCCGTCCAAGATGTCATTACCGAAGCCGTTGAAATCGAA 448809 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 | || || ||||||||||| | |||||| Sbjct 448810 CAAGAATTCTTGACCGAGGCTCTTCCTTGCGCCCTCTTGGGCATGAACTCTACTCTCATG 448869 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231 | ||||||||||||| || || || | ||| || || | |||| || || | | Sbjct 448870 AAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCGTTGC-TTTGGGTAACGACAAAGT 448928 Query 26232 CTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 |||| ||| ||| ||||| |||||||| ||||| ||||| || |||| || ||||||| Sbjct 448929 CTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATTTCCTTGGCTGGCAAGACCA 448987 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||| || |||||||| || || || || ||| Sbjct 448988 ACTTTTTCGAAAAGAGAGTTGGAGATTACCAA 449019 Score = 105 bits (116), Expect = 1e-17 Identities = 180/258 (70%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| ||||||||| |||||||||||| || Sbjct 448121 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACCGCAGAAGAGATTGATTTG 448180 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 | ||||| | ||| ||| | | | ||| ||||| ||| || ||| | Sbjct 448181 TCAAAGGATCTTCACGATTGGAATAATAGACTCAATGACGACGAGCGTTACTTCATCTCC 448240 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| ||||| || ||||| || || |||||||| || ||||||| Sbjct 448241 CACGTTCTCGCATTCTTCGCAGCATCCGATGGAATTGTAAACGAGAACTTGGTCGAGAGA 448300 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | ||||| | | | | | || | | || |||||||||||||| || || Sbjct 448301 TTCAGCGGTGAAGTTCAAATTCCAGAAGCACGA-TGCTTCTACGGTTTCCAAATCATGAT 448359 Query 25713 CGAAAATGTGCACTCTGA 25730 ||||| | ||||| || Sbjct 448360 GGAAAACATCCACTCCGA 448377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841131063040