Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 174 1e-37 seq3 95.1 8e-14 seq4 86.0 4e-11 >seq1 Length=2965994 Score = 174 bits (192), Expect = 1e-37 Identities = 370/548 (68%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| ||||| || || || ||| ||||| | | | | | ||| || | | Sbjct 1666468 ATTGGTATCGATTTGGGTACCACATACTCCTGTGTGGGTATCTTCCGTGATGATAGAATC 1666409 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || |||||||||||||| || | || ||||| || | ||| | || || || Sbjct 1666408 GAAATTATCGCCAATGACCAAGGAAACCGTACCACACCTTCCTTCGTTGCCTTCACAGAT 1666349 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | | | || |||||||| || || | |||| || || || | || ||| Sbjct 1666348 ACCGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACACT 1666289 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | |||||||||| || || | ||| | |||||| | ||| Sbjct 1666288 GTCTTCGATGCTAAGCGTCTGATTGGTCGCAAGTTCGCAGATGCAGAGGTCCAAGCCGAT 1666229 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629 ||| || | ||||| ||||| || | || || || ||| ||| || | | Sbjct 1666228 ATGAAGCACTTCCCTTTCAAGGTCATTGACCGTGCCGGAAAGCCAGTTATCGAGGTTGAG 1666169 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || ||||| ||||| |||| ||| |||||||||| ||| | || | || Sbjct 1666168 TTCAAG--GGCGAGACTAAGCAATTCACACCAGAAGAAATTTCTTCTATGATCTTGGTCA 1666111 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| | || |||||| | || | | || || | || Sbjct 1666110 AGATGAGAGAGACAGCTGAG-GCTTACCTTGGAGGAACTGTCAACAACGCCGTCGTCACA 1666052 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || | ||||| ||||||||||| || || || || || ||||| Sbjct 1666051 GTCCCAGCTTACTTCACCGATTCACAACGTCAAGCTACCAAGGACGCTGGTCTCATTGCT 1665992 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || || ||| | ||||| || || ||||| || ||||| || ||||||| ||| | Sbjct 1665991 GGCCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGTTTG 1665932 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1665931 GACAAGAA 1665924 Score = 114 bits (126), Expect = 8e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | ||| ||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 1569933 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGGGGA 1569992 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || || |||||||||||||| || || || || || || | || | || Sbjct 1569993 ATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCAA-C 1570051 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || || || |||||||||||||||||||| ||||| Sbjct 1570052 CTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTG 1570096 Score = 98.7 bits (108), Expect = 6e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || | || ||||| || || || ||||| ||||| Sbjct 1569650 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGT 1569709 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||| || || || | |||||||||||||| ||||| || Sbjct 1569710 TCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGATCAGGTGGAATACC 1569769 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||||||||| || ||| ||||||||||| Sbjct 1569770 CTCCTTATCTTGAATCTTGGCCTTAACATTATCAATAGTATC 1569811 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | ||| || | || || ||| || || || || ||||| | || || Sbjct 1570106 ACGAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGT 1570165 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| |||||||||||||| || ||||| | ||||||||| || || |||||||| Sbjct 1570166 TCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCC 1570225 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| |||||| || ||||| || Sbjct 1570226 CTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATAGTGTC 1570267 >seq3 Length=2936196 Score = 95.1 bits (104), Expect = 8e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | | || ||||||||||||||||| || || | ||||||| Sbjct 1398832 TTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGT 1398773 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || |||||||| || |||||||| ||||| || ||| || ||||| ||| Sbjct 1398772 TGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCGATAGTGTCA 1398713 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | |||||||| || || || || || || ||||| ||||| Sbjct 1398712 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 >seq4 Length=2737121 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || | || ||||| || || || ||||| ||||| Sbjct 1682965 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTT 1683024 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| ||||||| || || || || | | | || || ||||| | Sbjct 1683025 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAA-CCTCGAGGGTGA 1683083 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || ||||| ||||| ||||| || || Sbjct 1683084 TAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTG 1683117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165645226768