Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9 136 5e-27 >seq9 Length=1448665 Score = 136 bits (150), Expect = 5e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 ||||| |||| ||||| || |||||||||| || ||| || || | || |||||| Sbjct 485845 AGTCCTTCTGGCCCATGGTAAACTGCATAGAACGCACTCATGTTGGCCAACAATGCTTGA 485904 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 || ||||| | ||||| || || || ||||| | |||||||||||||||||||||||| Sbjct 485905 GCCGTGCACACATTACTAGTAGCCTTTTCTCTGCGAATATGCTGCTCTCTAGTTTGTAGA 485964 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || ||||| ||| || ||| |||||| ||| ||| | | | || || Sbjct 485965 GCCAATCTCATTGCCTTATCCCCTAGCCTGTCCTTTGATACACCAATGAGACGTCCTGGA 486024 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 || ||||||||||||||||| || ||||| |||||||| ||||| || || || Sbjct 486025 ATTTTTCTCTTATACTTGTCGCCAACAGCGAAGAAAGCAGCATGTGGACCACCATAACCA 486084 Query 139500 ATAGGAATACCAAACCTTTG 139519 | |||| ||||| | ||| Sbjct 486085 AATGGAACTCCAAAACGTTG 486104 Score = 120 bits (132), Expect = 4e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| || || || || ||||| || || ||||||||||||||||| || Sbjct 484699 ACACCAATTGGACCAACACCTGGTCCACCACCACCGTGAGGAATACAGAATGTCTTGTGA 484758 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || || || |||||||| |||||| |||| ||| | || | || ||| Sbjct 484759 AGGTTAAGGTGGCATACATCGGCACCAATCTCACCAGGTGAACACAATCCAATTTGAGCA 484818 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | ||||| |||||||||| | |||||| || | |||| | Sbjct 484819 TTCATGTTGGCACCATCCATGTATACTTGACCACCATGTTGATGAACAATATCACAT-GC 484877 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | | || | || ||||||||||||| || ||| ||||| ||||| ||| Sbjct 484878 GGCCTTAATTTCTGGTTCAAATACACCAAATGTACTTGGGTATGTGATCATGATA 484932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996112956320