Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 seq4 104 4e-17 >seq1 Length=2965994 Score = 109 bits (120), Expect = 1e-18 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATAT 193182 |||||| |||||| | | || || |||| ||||| || || | |||| ||| | | Sbjct 1569636 ATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGAA-TGT 1569693 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || || | | ||||| ||| || || || |||||||| || || |||| |||| Sbjct 1569694 TGTAATCCAAAAGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAATCGTTGTT 1569753 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 ||||||| || || || || |||||||| || |||| || | ||| ||||||||| | Sbjct 1569754 GATCAGGTGGAATACCCTCCTTATCTTGAATCTTGGCCTTAACATTATCAATAGTATCTG 1569813 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || |||| || || || || || || | || || ||||| |||||||| Sbjct 1569814 AAGATTCTACCTCTAATGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| ||| || || | ||||| || || Sbjct 1569864 ATTTGCATACCACCACGGAGACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTG 1569923 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | ||| || || ||||| || | | |||||| Sbjct 1569924 TAGTCGGAAAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGA 1569983 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || ||||| ||||| || || | || | || || || || || Sbjct 1569984 TCAGGGGGAATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGAT 1570043 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| |||| ||| || || || || || || || || || || |||||||| Sbjct 1570044 GACTCAACCTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 >seq4 Length=2737121 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | ||| |||||||| || || |||| | Sbjct 1682939 ATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGC 1682998 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || ||||| || || ||||| || |||| ||| | ||| || || Sbjct 1682999 TGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTG 1683058 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||||||||| || || || |||||||| || || || || || || || || ||| Sbjct 1683059 TCCGAAGACTCAACCTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGC 1683118 Query 193359 AT 193360 || Sbjct 1683119 AT 1683120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650846365120