Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq36 127 6e-24 seq35 123 7e-23 seq9 114 4e-20 seq1 114 4e-20 seq2 91.5 4e-13 >seq36 Length=569963 Score = 127 bits (140), Expect = 6e-24 Identities = 563/881 (64%), Gaps = 19/881 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || ||||| ||||| ||| || || || || || | ||||| ||||| Sbjct 131153 GTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTTTTGGTT 131094 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||| || ||||| ||||| || ||| | || |||| ||||| | || || Sbjct 131093 GCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGC 131034 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| | ||| || Sbjct 131033 CTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTTCCTGCCTT 130974 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||||| | || || | ||| | | | ||||| || ||| ||| || |||||| Sbjct 130973 TTCATAACTCTCGTAGAGAGCCTC--GAACTCCTCGCCATAAACATCTGCCAAACCAGGG 130916 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | || |||||| | || | ||| | ||| | || ||||||| ||| || | Sbjct 130915 CATTCATTGGGGCACATAAGAGTCCATTCTCCATT--CTTTTCAACACGCTTCATGAACA 130858 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||| | |||||||| || || | || || || | ||||| | Sbjct 130857 AATCAGGAATCCACAAGGCATAGAAGAGATCGCGCGCACGAACTTCTTCCTTACCGTGGT 130798 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 | || ||||| || | || || || ||| | ||| |||||| || || | ||||| Sbjct 130797 TTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAA 130738 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | |||| | ||| ||||| ||||| ||||| | ||||| || ||||| || | Sbjct 130737 ACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTC 130678 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG-CGAA-TATGCGAACCAGA 156160 ||||| |||| ||||||||||||| | || ||||| ||| ||| ||||| ||||| Sbjct 130677 GAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGC--ACCAGT 130620 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCG 156218 | || | | ||||| | || ||||||||||| | ||| || || || || Sbjct 130619 AGCACGGATTCTGTGAATGTTGAGACCAATACCACCGG--CATTCTTTGAGATCATGGCA 130562 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 || ||| | ||||| | | ||||| |||||| || || | ||| | || || Sbjct 130561 CAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAG 130502 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || || | ||| | | |||| || || || || ||||| || | ||||| || Sbjct 130501 CAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATGTGTA 130442 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGA 156398 || ||||| || ||||| | | |||||| || || | || | || | |||||| Sbjct 130441 AAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGA 130382 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 |||| | | || | ||| ||| || |||||||| || ||| ||||||| Sbjct 130381 ATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCCATCAAGA 130322 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || | ||| |||| || || || || ||||| ||||| || Sbjct 130321 CGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTA 130281 >seq35 Length=579746 Score = 123 bits (136), Expect = 7e-23 Identities = 179/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| | ||| || ||| ||||||| || | ||| ||| | Sbjct 548191 ATGAGTCCACAGATGTCACAGATATGAACTCTGAAAGCATCCGAGACCTCAAATAATCTC 548132 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | ||||||||| ||||||||||||||||| ||||| || |||||| Sbjct 548131 TCCTTCAGGAAAGCACTTGCACCGTGAGAAATCATACAATCACGTTCCATCTCTCCGAAA 548072 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 |||||||||||||| | ||| | ||| || |||| || | || ||| | | ||| Sbjct 548071 CGAAGACCACCATCTCTAGCACGACCTTCTACAGGTTGTCTGGTTAGAATCTGTACCGGA 548012 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| |||| ||| ||| || | |||||||| ||||| ||||| ||| | Sbjct 548011 CCTCTGGCGCGGGCATGAATCTTGTCGTCGACCATATGGCGCAGACGTTGGTAATATGTG 547952 Query 251647 GGACCGATGAAGA 251659 || |||| ||||| Sbjct 547951 GGGCCGAGGAAGA 547939 >seq9 Length=1448665 Score = 114 bits (126), Expect = 4e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 || ||||||| ||||| ||||| | ||||||||| | |||||||| || |||||| Sbjct 448505 AAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTCAAATGGATTCAAGACAAGAACT 448564 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | |||||| ||||||||||| || || | || ||||| || || ||| ||| Sbjct 448565 CTACCTTTGCTCAACGTCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGAT 448624 Query 133554 CGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTA 133613 | ||| || || || ||||| || ||||||||| | | ||||||| || || | Sbjct 448625 CTTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGACTCACCTTCTCCA 448684 Query 133614 ACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||| || || | ||||| | || |||||||| || || Sbjct 448685 ACGAACTCATCTCCCGTGACGAAGGTCTCCACACCGATTTCGC 448727 >seq1 Length=2965994 Score = 114 bits (126), Expect = 4e-20 Identities = 232/340 (68%), Gaps = 7/340 (2%) Strand=Plus/Plus Query 288892 TCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATA 288951 |||| |||||| || | || | |||||||| || || || || |||||||| Sbjct 328328 TCGGGTCTGTTGGTACCAGCAAGAACAACAATTTGCTCAGTCGTGTTGAAACCATCCATC 328387 Query 288952 CTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC--TTGAAT-CA 289008 |||||||||||||| ||||| |||| |||||| ||| ||||| |||| | Sbjct 328388 TCAGTTAAAATTTGATTGAGTGTAGCCTCCCGTTCATCGTTTCCACCTCCGGAGAATCCG 328447 Query 289009 CCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGA 289068 || || | || | || |||| |||||| || || |||||||| || | ||| ||| Sbjct 328448 CCAGATTTGCCACGGGACTTTCCAATAGCATCGATCTCATCAATGAATATGATACATGGA 328507 Query 289069 GAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATAC 289128 | | ||| ||| || || || || | || | || | |||||||||| |||||| || Sbjct 328508 GTACTTTTTCTTGCCATGGCGAAGAGGTCCCGGACTCTCGATGCTCCAACACCAACGAAC 328567 Query 289129 ATTTCTACAAATTCAGAA--GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTA 289186 || || || || || ||| | || ||| || ||||| ||| | | ||| || ||| Sbjct 328568 ATCTCCACGAACTCGGAACCACTGACACT--AAAGAATGGTACTTGAGATTCACCAGCTG 328625 Query 289187 CTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 |||| | || || | ||| ||||| || || ||||| || Sbjct 328626 TTGCCTTTGCTAGTAATGTTTTACCAGTACCTGGTGGACC 328665 >seq2 Length=2942574 Score = 91.5 bits (100), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||| ||||||||||||||| | ||| || || || ||||| || | | Sbjct 924223 TTGACAAGACGACGTTGAATATAACCAGTTTCTGCTGTCTTGACCGCGGTATCGATCAAA 924282 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||| |||| || |||||||| | |||| || || || | | | Sbjct 924283 CCTTCACGACCAGCCATTGCGTGGAAGAAGAACTCTGTTGGGGTGAGACCTCTTAAGTAT 924342 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| |||| || ||||| | || || ||||||| ||| ||| || || ||||| || Sbjct 924343 GAGTTCTCGACAAAACCTCTCGATTCTGGCGAATAATCGTCCTTTGTGAAATGTGGAAGA 924402 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA----G 302819 || | || | | ||| | || ||||| || || || || || || |||| | Sbjct 924403 GTGCGGTATTTGAAACCGAAAGGAATACGTTTACCTTCCACAGATTGTTGGCCCACAAGG 924462 Query 302820 GCACGAAATCATCTGCGAAATATT 302843 ||| || |||||| |||||||| Sbjct 924463 GCA-GA---CATCTGAGAAATATT 924482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811640978492