Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-20 seq9 105 8e-17 seq12 87.8 2e-11 >seq1 Length=2965994 Score = 116 bits (128), Expect = 5e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||| || || ||||||||| | || |||||| |||| || ||| | || || ||| Sbjct 367109 GCCGCCAATTATCTTGACATCAAGGCCCTTCTCGATGTTGGATGTAAGACCGTCGCAAAC 367050 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| Sbjct 367049 ATGATCAAGGGAAAGTCACCAGAGGAGATCCGAAAGACCTTCAACATCA 367001 >seq9 Length=1448665 Score = 105 bits (116), Expect = 8e-17 Identities = 143/196 (73%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | ||||||| |||| ||| || | |||||| || ||||| Sbjct 448710 ACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATGAGACCACGCTT 448651 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| |||| || ||||| ||||| ||||| || ||||| || Sbjct 448650 CTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCTCAACAGCGGCGAA 448591 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG--TTG-ATCCACTTCATCGC 869355 | | ||| || | |||||| || ||| | |||| ||| ||||| || | || Sbjct 448590 TGCAACGAGACGTTGAGCAAAG--GTAGAG----TTCTTGTCTTGAATCCATTTGACAGC 448537 Query 869356 CCAGTCGGCCTTTTTC 869371 |||||||||||| ||| Sbjct 448536 CCAGTCGGCCTTCTTC 448521 >seq12 Length=1284656 Score = 87.8 bits (96), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||| || || || || ||||| |||||| || || | ||||| ||||| Sbjct 444472 GACAGCATCGGAGGAACCGTTACTTGCGTAATTCGCAATGTTCCATCCGGCCTTGGCGAA 444413 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || || || || || || || || |||||| || |||||||| || || ||| || Sbjct 444412 CCTTGTTTCGATAAAATGGAAGCAATGCTCGCTCATGCCATGCTCAGTATTCCTGCCTCC 444353 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTTG 19194 ||||| ||||| ||||| ||| |||| Sbjct 444352 AAGGGTTTCGAAATTGGATCCGGTTTTG 444325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107113267560172