Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq1 118 1e-21 seq36 105 6e-18 seq3 102 7e-17 >seq4 Length=2737121 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || ||||| || || | | Sbjct 1683120 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 1683061 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| || ||||| || ||||| ||| Sbjct 1683060 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 1683001 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || || || |||||| | | | | || || || ||| Sbjct 1683000 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 1682941 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || ||||| ||||| || Sbjct 1682940 ATCCAAAAGGAGTCCACTCTTCACTTAGTGTTACG 1682906 >seq1 Length=2965994 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || ||| |||||| | || | || || Sbjct 1570303 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATCGACAATGTCAAGGCC 1570244 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || || ||||| || ||||| |||||||||||||| || ||||| || Sbjct 1570243 AAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAAAG 1570184 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| ||| | | || ||||| |||||||| ||||| || || || ||| Sbjct 1570183 CAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCCAC 1570124 Query 24908 TTGGT 24912 ||||| Sbjct 1570123 TTGGT 1570119 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || | || |||||| | | Sbjct 1569871 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACATTAGAGGTAGAATCTTCA 1569812 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||| || || || || || || |||||| Sbjct 1569811 GATACTATTGATAATGTTAAGGCCAAGATTCAAGATAAGGAGGGTATTCCACCTGATCAA 1569752 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| || ||| |||||||| |||| | | ||||| ||| Sbjct 1569751 CAACGATTGATCTTCGCCGGAAAGCAGTTGGAGGATGGCAGAACTCTTTTGGATTACAAC 1569692 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||||||| || | ||||||||| Sbjct 1569691 ATTCAAAAGGAAAGCACCTTGCACTTGGTG 1569662 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || ||||| || || || || | || || || | | Sbjct 1570099 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCG 1570040 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||||||||| || || || || |||||| Sbjct 1570039 GACACCATCGACAACGTGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCAA 1569980 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || || || |||||| | | | || || || ||| Sbjct 1569979 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAAC 1569920 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| |||||||| |||| ||||| Sbjct 1569919 ATCCAAAAAGAATCGACTTTACATTTGGT 1569891 >seq36 Length=569963 Score = 105 bits (116), Expect = 6e-18 Identities = 418/650 (64%), Gaps = 21/650 (3%) Strand=Plus/Minus Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 || ||||| || | |||| | || ||| | || ||| ||||||||| ||| |||||| Sbjct 130906 GGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCTTCATGAACAAATCAGGAATC 130847 Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488 ||||| || | | | ||||||||| |||||| ||| ||| || | | Sbjct 130846 CACAAGGCATAGAAGAGATCGCGCGCACGAACTTCTTCCTTACCGTGGTTT--TTGCGTA 130789 Query 139489 --TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTT 139546 | ||| || || ||||| || || |||||||| || || || | || | || || Sbjct 130788 GATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTAAACAGCAAACGCACCAG 130729 Query 139547 TCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCG 139603 |||||| ||||||||||| || | || ||| || ||||| || || | ||| | Sbjct 130728 GACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCGAAGCATGG 130669 Query 139604 GCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGG 139659 | | | ||| | | |||||||||| || | | ||| | || ||| ||| Sbjct 130668 GAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGCACCAGT----AGCACGG 130613 Query 139660 ACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT 139719 | || | |||| || || || ||| || || || || | | ||| Sbjct 130612 ATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTC 130553 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 || || ||||| ||||| || ||||| |||| ||| || || ||||| || ||| Sbjct 130552 AAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGAA 130493 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTG 139838 ||||| | | || || || || | ||| || || || || || || || | ||| Sbjct 130492 AGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATGTGTAAAGTACTTG 130433 Query 139839 TTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGAC 139898 ||| |||||||| | ||| |||||||| || || | ||||| ||||| ||||| || Sbjct 130432 TTT-GACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAAC 130374 Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958 | || ||||| | ||| ||||| ||||| || || ||| || | | || Sbjct 130373 GGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCCATCAAGACGTAAAAG 130314 Query 139959 ATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| | || ||| |||||||| | || ||||| ||||||||||| Sbjct 130313 ATATGATCG--CTCAAGGGTCTTAAATCCGAAGTATTGGTAGTTGAAATC 130266 >seq3 Length=2936196 Score = 102 bits (112), Expect = 7e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 24691 ACTGATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGA 24750 |||||| ||||| || | | ||| | || || || || || || || || || || || Sbjct 1398643 ACTGAT-GATACAATA-ATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGA 1398700 Query 24751 AGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAAT 24810 || || || | ||||| | || | || || ||||||||||||||||| ||||| Sbjct 1398701 GGTCGAGTCCTCTGACACTATCGACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAAT 1398760 Query 24811 ACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT 24870 || ||||||||||||||||||||||| || || || || || ||||| | | | Sbjct 1398761 TCCCCCCGATCAACAACGTTTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGTACTCT 1398820 Query 24871 GTCAGATTATAACATTCAAAAGG 24893 |||||||| ||||| ||||||| Sbjct 1398821 TTCAGATTACAACATCCAAAAGG 1398843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895822904480