Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4 129 4e-25 seq1 107 1e-18 seq3 86.0 4e-12 >seq4 Length=2737121 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||||| ||| |||||| || ||||| ||||| || ||| |||| |||| || ||||| Sbjct 1682917 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTG 1682976 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||||||||||||||||| ||| || ||||| | || | ||||||||||| | || || Sbjct 1682977 CTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTT 1683036 Query 34894 TTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTC 34949 |||||| || | ||||| || | ||| || || | ||| || || || | Sbjct 1683037 GGCTTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAGTTTTGC 1683092 Query 34950 CCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||||||||||||| || ||||||||||||| Sbjct 1683093 CCGTGAGGGTCTTGACGAAGATCTGCATGA 1683122 >seq1 Length=2965994 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || |||| ||| | ||| ||||||||||||||| || || || ||| | || || Sbjct 1570113 CTGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGTTCGACCA 1570172 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||||||||||||||| |||| ||||| ||||| | || | |||||||| Sbjct 1570173 TCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCCCTCCTTA 1570232 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || ||||| || | ||||| || ||| |||||| |||| ||| Sbjct 1570233 TCTTGGATCTTGGCCTTGAC--AT--TGTCGATAGTGTCGCTGGACTCGACCTCAAGGGT 1570288 Query 34939 TATGGTCTTTCCCGT 34953 ||||||||||| || Sbjct 1570289 GATGGTCTTTCCGGT 1570303 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||| ||||| |||||||| || ||| | || | | |||| Sbjct 1569660 AGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCCATCC 1569719 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||||| |||||| || || | || | |||||||| || Sbjct 1569720 TCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGATCAGGTGGAATACCCTCCTTATCT 1569779 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || |||| || || | || || || | || || Sbjct 1569780 TGAATCTTGGCCTTAAC--AT--TATCAATAGTATCTGAAGATTCTACCTCTAATGTGAT 1569835 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | |||||| |||||||| ||||| Sbjct 1569836 GGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 >seq3 Length=2936196 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || | || | || || ||||||||||| ||||||| Sbjct 1398843 CCTTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1398784 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | ||||| ||||| | || || || || || Sbjct 1398783 TCAAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAAC--AT- 1398727 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| ||| || |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 1398726 -TGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 1398668 Query 34964 ACAAAG 34969 || ||| Sbjct 1398667 ACGAAG 1398662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691545675604