Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq1 109 4e-19 seq3 89.7 4e-13 >seq4 Length=2737121 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| | ||| || ||||| ||||| || ||||| ||||| || || | || |||||| Sbjct 1682905 ACGTAACACTAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCC 1682964 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || || || | ||||||| || || || || || || ||||| || Sbjct 1682965 ATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTT 1683024 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||||| | || | ||||| ||| || || || || || || Sbjct 1683025 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 1683084 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || | ||| || || || |||||||| Sbjct 1683085 AGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1683120 >seq1 Length=2965994 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || | ||| ||| ||||||||||| |||||| || || | Sbjct 1569656 ACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCC 1569715 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | ||||||| ||| ||||| || ||||||||||| || Sbjct 1569716 ATCCTCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGATCAGGTGGAATACCCTCCTT 1569775 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| | || | ||| || ||| |||||| || | || | Sbjct 1569776 ATCTTG-AATCTTGGCCTTAACATTATCAATAGTATCTGAAGATTCTACCTCTAATGTGA 1569834 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||||| || ||||| || ||||| Sbjct 1569835 TGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || ||||||||||| ||||| || || | || ||||| Sbjct 1569884 ACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCC 1569943 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||| ||||| || ||||| |||||||| Sbjct 1569944 ATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGGGGAATGCCCTCTTT 1570003 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || || | || | ||||| || || || || | ||| | Sbjct 1570004 GTCTTG-AATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCAACCTCTAAAGTGA 1570062 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | || ||||| || || ||||| Sbjct 1570063 TCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 >seq3 Length=2936196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||| ||||| ||||| | || || || || || ||||| || ||||| | ||| Sbjct 1398841 TTTTGGATGTTGTAATCTGAAAGAGTACGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1398782 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 || | ||| ||||| || ||||| |||||||||||||| | || || ||| | || Sbjct 1398781 AAACGTTGTTGATCGGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTGTCG 1398722 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | ||||||||| || || ||||| || || || ||||| || | ||| || || || Sbjct 1398721 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1398663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217716424556