Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-23 seq1 102 6e-16 seq25 87.8 1e-11 >seq2 Length=2942574 Score = 125 bits (138), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || |||||| | | |||||||||||||||||||||||||| | ||||| ||| Sbjct 925766 GGTAAGGAGGGTCGTCTCCGTGGAAATTTGATGGGAAAGCGTGTCGACTTTTCTGCTCGT 925707 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || ||||||||| |||||| ||| || | || |||| || || ||||||| | ||| Sbjct 925706 ACTGTTATTACTGGTGATCCCAATCTTTCCCTAGATGAGGTCGGAGTTCCTCGAAGCATT 925647 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 |||| || ||| || | | || | || ||| | ||||| ||| | ||| ||| Sbjct 925646 GCGAGAATTCTCACATATCCGGAGACCGTCACACCCCTAAATATCGATAAATTGCATCAG 925587 Query 432468 TTAGTGAAAAATGGT--AAAAGAGTATATCCAGGTGCCAATTTTGTAATC 432515 | || ||||||||| | | ||| |||| |||||||| | ||| ||| Sbjct 925586 CTTGTCAAAAATGGTCCAGATGAG--CATCCTGGTGCCAAATATGTCATC 925539 >seq1 Length=2965994 Score = 102 bits (112), Expect = 6e-16 Identities = 247/369 (67%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| || || || ||||||||||| || || | | |||||| Sbjct 1664476 ATTCCGTTGGCATCAAGATCGAAAGTAACCTCAATTTGAGGAACACCACGTGGTGCAGGT 1664535 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| || || || || ||| || ||||| Sbjct 1664536 GGGATACCAGTGAGCTCGAATTTACCCAAGAGGTTGTTGTCCTTGGTGCGTTGACGTTCG 1664595 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA-CTCT 281619 |||||||| | |||||| ||| ||| ||| || || || | || | || | |||| Sbjct 1664596 CCCTCGAAGACTTGGATGAGAACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACCTCT 1664655 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || || || || |||||||| ||| | |||||||| |||||||| Sbjct 1664656 -GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGAATGAGCTTGGTCATTTGTCCACCAGC 1664714 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| | || | ||||| | |||| || | || | | || Sbjct 1664715 AGTCTCGATACCGAGAGACAATGGGGCAACATCGAGGAGGAGGATCTCGTTAGTGGACTT 1664774 Query 281738 TCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 || ||| | ||| ||||| || || || | |||||||| ||||||||||| || Sbjct 1664775 GGATGAAGTGTCACCGGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTC 1664834 Query 281797 ATCAGGATT 281805 |||||| || Sbjct 1664835 ATCAGGGTT 1664843 >seq25 Length=821810 Score = 87.8 bits (96), Expect = 1e-11 Identities = 191/284 (67%), Gaps = 13/284 (5%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| |||||||| |||||||| | ||| | || | |||| |||| || | || Sbjct 660716 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCAGTAGAAAGAACTTCAAAGACACC 660775 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA---AATAAG 282309 | |||| || | ||| | |||||| ||||| ||||| | |||| | ||| | Sbjct 660776 ACGGTCAATGGAGAGAAGGGAAACATCGAAAGTTCCTCCACCGAGATCATAGACAATGAT 660835 Query 282310 T--ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | || |||| || |||||| || | ||| || |||| ||| || || || Sbjct 660836 TTGACGTTCACC-CTCAGTCTTG-------TCCAAACCGTAAGCAATAGCTGCGGCGGTA 660887 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| | || | | || || | ||| ||||| | || ||||| ||||||||| Sbjct 660888 GGTTCATTGACGATACGAAGGACGTTCAAACCGGCAATGATACCGGCATCCTTAGTGGCT 660947 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| ||||| || || || |||||||||| ||| || Sbjct 660948 TGTCTTTGGTTGTCGTTGAAGTAGGCTGGAACAGTAACAACTGC 660991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740614885735416