Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 147 4e-30 >seq1 Length=2965994 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||| || || || || ||||| | ||| |||| || Sbjct 1569656 ACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCTGCC 1569715 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || ||||| || ||||| | || ||||||||| || || || || ||||| Sbjct 1569716 ATCCTCCAACTGCTTTCCGGCGAAGATCAATCGTTGTTGATCAGGTGGAATACCCTCCTT 1569775 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| || || ||||| ||||| ||||| || |||||| || || || || Sbjct 1569776 ATCTTGAATCTTGGCCTTAACATTATCAATAGTATCTGAAGATTCTACCTCTAATGTGAT 1569835 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| || ||||| Sbjct 1569836 GGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1569871 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || | ||| |||||||| || || || || || | Sbjct 1569871 TACCACCACGGAGACGAAGAACCAAATGTAAAGTCGATTCTTTTTGGATGTTGTAGTCGG 1569930 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || ||||| || ||||||||||| || | ||||||||| || | Sbjct 1569931 AAAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGGG 1569990 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||||||||| || || || || || || || || | || | Sbjct 1569991 GAATGCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCCGATGACTCAA 1570050 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| |||||||| || || | ||||| || || || ||||| Sbjct 1570051 CCTCTAAAGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT 1570099 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| ||||| || ||||| || ||||| || || ||||| || || ||| ||| || Sbjct 1570116 AGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGAGAGGGTTCGACCATCC 1570175 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| ||||| || || || | | |||||| || || || ||||| ||||||||| Sbjct 1570176 TCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGGGGAATTCCCTCCTTATCT 1570235 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| || || || || | | || || || | || || ||| Sbjct 1570236 TGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTC 1570295 Query 82779 TTGCCTGT 82786 || || || Sbjct 1570296 TTTCCGGT 1570303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823224827124