Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 1e-13 seq1 91.5 3e-13 >seq4 Length=2737121 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| | || || || ||| ||| Sbjct 1683117 CAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCGGAC 1683058 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || || ||||| || ||| || Sbjct 1683057 ACCATCGACAATGTCAAAGCCAA-GATCCAAGACAAGGAGGGAATCCCACCCGACCAACA 1682999 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||||||||||||||| | || ||||| | || | |||| |||||| | Sbjct 1682998 GCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACAT 1682939 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||| || ||||| ||||||||| | || || Sbjct 1682938 CCAAAAGGAGTCCACTCTTCACTTAGTGTT 1682909 >seq1 Length=2965994 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| ||||||||||| || || || || ||||| |||| Sbjct 1570084 AAGACTCTCACCGGAAAGACGATCACTTTAGAGGTTGAGTCATCGGACACCATCGACAAC 1570025 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| ||||| || ||| || || ||| | |||||||| Sbjct 1570024 GTGAAGGCTAAGATTCAAGACAAAGAGGGCATTCCCCCTGATCAACAACGTCTTATCTTT 1569965 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | || ||||| | ||| | |||| |||||| |||| ||||| || Sbjct 1569964 GCTGGTAAGCAACTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAAAAAGAATCG 1569905 Query 206365 ACT 206367 ||| Sbjct 1569904 ACT 1569902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || ||| ||| | | || |||||||||||| Sbjct 1570243 AAGATCCAAGATAAGGAGGGAATTCCCCCCGACCAACAACGTTTGATTTTCGCCGGAAAG 1570184 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || ||||| | || | ||||||||||| | ||||| |||||||| || ||| Sbjct 1570183 CAACTTGAGGATGGTCGAACCCTCTCCGATTACAACATTCAGAAGGAGTCTACCCTCCAC 1570124 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | |||||||| Sbjct 1570123 TTGGTTCTCAGACTTCG 1570107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816015103036