Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36 372 4e-98 seq9 109 8e-19 >seq36 Length=569963 Score = 372 bits (412), Expect = 4e-98 Identities = 1344/2071 (65%), Gaps = 61/2071 (3%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||| ||||| |||| || || | | ||||||| ||||||||| ||||| |||| | Sbjct 132103 GTAAATTGAATTGGTGCTGAGGCAGCCATAGTACGTAAATAGTACATTCCGGTCTTCAAA 132044 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | ||||||| ||||||||| ||| | ||| | ||||| || Sbjct 132043 CCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTTGCCCATTGTAGGATCCTTCATG 131984 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| |||||| ||||||||| || || || | ||| || ||||||| | | Sbjct 131983 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 131924 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||||||||||| |||||| ||| |||||| ||| |||||| | Sbjct 131923 ATTGTTCGTTGAGAAATTTCCCAAACAGTCTTGTAAAGGGCTTTGATGTCAGCTGGAATG 131864 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| ||||||||||||| || || ||||| || | ||| | Sbjct 131863 TTGGGGATGTTTTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 131804 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | ||| | || | ||||| || ||||| | ||| ||||| ||| Sbjct 131803 CAGAGACCCATATCCACAAGGTCTTTGAGGAGCCATGGGTTAACAACTTGGAATTCTCCA 131744 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||| | ||| || || ||||||||||| | | |||| || || Sbjct 131743 GCTAGAACACGACGTGAGTAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGAAACCG 131684 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 || ||||| | ||| ||||| ||||||||||| || | | || | || || Sbjct 131683 AGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCAACGAGAAGGGAGTTGCGAATTCCG 131624 Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910 ||| |||| | || | | | ||||||||| | |||||| || || | Sbjct 131623 TGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCCCACAAATCAGAAGGGGTGACGCCC 131564 Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966 || | || ||||| || || || ||| | || || | ||| ||||| || Sbjct 131563 CACATGTCATATTGGAGTTCACCCTTGGAGACTGGG----GAGCCTTGATAGGTTTCGTA 131508 Query 68967 AGGTCC---TTCCTGTTCAG-CTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTG 69022 || || ||||| | || || | ||| | || || ||| ||| ||||| | Sbjct 131507 CGGGCCAAGTTCCTTTGCAATCTCG---ACAGATGAGGTC-AAGGCAGCGTGGTAAATGG 131452 Query 69023 TTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081 | |||||||||| | ||||| | |||| |||||| | ||| |||||| | | || Sbjct 131451 TCTCGAAAATCTGGATGTTGAGGTGCTTG-GCTTCTGGCGAATCAAATGGAAGACG-AAG 131394 Query 69082 AG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTAT 69139 || || ||| ||||| || | || ||||| |||| | ||||||||| || | || Sbjct 131393 AGCCAAGAAA-GCATCAGCAAGACCTTGAACACCAACAGCGATAGGTCGGTGACGGAAAT 131335 Query 69140 TTGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 | | ||||| | ||||| | | |||||||| || ||||| || || || || | ||| Sbjct 131334 T-GCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATCAATGATCTTGTTCAAGTTT 131276 Query 69199 CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATC 69251 | || || |||| || || || | || || | |||||| | || | ||| Sbjct 131275 CTAACGACAACTTGGACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCATTCATG 131216 Query 69252 TATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 | | ||| | | || || | || || | ||||| || ||||||| | Sbjct 131215 TTGACGAAAGTTGGT-AGAGCAATTGAAGCCAAGTTACAGCAAGCAACCTCATCTGG--- 131160 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 |||| || | | |||||||| || | || | ||||| || || || | Sbjct 131159 TGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGCGAATAGTACCAAGGTTCTT 131100 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 || || ||||| ||||| || || || |||||||| || || ||| | || || || | Sbjct 131099 TTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGT 131040 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 |||| || | |||||| | ||||| ||| || || |||||| || ||| Sbjct 131039 TTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGATA---GTCTTGCGACCCTT 130983 Query 69489 CTCT---TTTTCATAT-TGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 || |||||||| | | ||| | |||| ||||| || || || ||||||| || Sbjct 130982 TCCTGCCTTTTCATAACTCTCGTAGAGAGCC--TCGAACTCCTCGCCATAAACATCTGCC 130925 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTC 69603 || ||||| |||||||| || ||||| | | ||| | ||| | | ||| || ||| Sbjct 130924 AAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTTTTCAACACGCTTC 130865 Query 69604 ATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATT 69662 || || | ||| |||||||| | || ||| |||||||| | | | | |||||| || Sbjct 130864 ATGAACAAATCAGGAATCCACAAGGC-ATAGAAGAGATCGCGCGCACGAACTTCTTCCTT 130806 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || ||||| ||||| |||||||| | || ||| | ||||||||| || || || Sbjct 130805 ACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCATGCCATGGCTCAAGGTA 130746 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 | || | | || || ||||| || || || ||||| | |||||||||||||| || Sbjct 130745 AACAGCAAACGCACCAGGACGTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTT 130686 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 | |||| ||||| |||| ||||||||| || || || || || || | || || Sbjct 130685 GAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTTGGTACCGGCGATGTATGC 130626 Query 69843 TCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAG 69902 || | || || || | ||| ||||| || || || || | || ||||| | Sbjct 130625 ACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCGGCATTCTTTGAGATCAT 130566 Query 69903 AGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAG 69962 |||||| ||||| || || || ||||| || || || || || |||||| | || Sbjct 130565 GGCACAAATCTTCAAAGTATCGTAGATACCATCAATACTGTCCTCCTTCATGTCGATGAG 130506 Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || || || | ||| ||| ||| |||||| ||| | ||| || || || || Sbjct 130505 GAAGCAAGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAAAAGAGTGTTGGGGAAGCATG 130446 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 || || | || | || | || ||||||||||| ||||| ||| ||||| ||| Sbjct 130445 TGTAAAGTACTTGTTTGACATCAAGTTGTATGTTTCGATAGCACTTTCGATATCATCACC 130386 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 | ||||| || | || |||||||| | ||| || ||||| ||||| | ||| || Sbjct 130385 G-TGAATACCAACGGCAACACGCATGATCATTTGTTGAGGACGTTCCGCAACTTTGCCAT 130327 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAA 70199 | || || |||||| || || || ||||| || || || | ||| ||||| Sbjct 130326 CAAGACGTAAAAGATATGATCGCTCAAGGGTCTTAAATCCGAAGTATTGGTAGTTGAAA- 130268 Query 70200 GTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCAT 70259 || || || || | |||| |||| || |||| |||| || | | | || || | Sbjct 130267 -TCCCTGTCATAGACAATAGCAGAGTTGAGTTCTTCCTCATGTCTCATGAC-GCATTCGA 130210 Query 70260 AACAGTAGGTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATA 70318 || | || || || |||||| ||| |||||||| || || ||| | | ||| Sbjct 130209 AAGTTTCCTTGCTAATCATAGGAGATGCTTTGCCATTTTTTGGGTTTGTATATTGGTATA 130150 Query 70319 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTA 70378 |||| || || | ||| |||| || |||| ||||| | ||||| | || | Sbjct 130149 AATCGCGGATAACGTGGGAGAATTGTTTCTTGGTTTGTTTGTGGAGGTTTGACACTGCAA 130090 Query 70379 TTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 | | || |||||||| ||||| || ||||| Sbjct 130089 TACGAGCAGCTAGAATGGCATAATCGGGATG 130059 >seq9 Length=1448665 Score = 109 bits (120), Expect = 8e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39658 TTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGC 39717 |||||| || || |||||||||| ||| ||||||||||| |||||||| || |||| || Sbjct 448689 TTCGTTGGAGAAGGTGAGTCCAGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGC 448630 Query 39718 AAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||||||| |||||||| || || || || || |||||||| || Sbjct 448629 GAAAGATCCAGAGAAGAAGATACCCTCAACAGCGGCGAATGCAACGAG 448582 Score = 104 bits (114), Expect = 3e-17 Identities = 180/260 (69%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || ||||||||||| ||| || || || ||||| || |||| |||||| | || Sbjct 448379 TTTCGGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCTTCTGGAA 448320 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| || || | ||||| || |||| || || || || |||||||| || | Sbjct 448319 TTTGAACTTCACCGCTGAATCTCTCGACCAAGTTCTCGTTTACAATTCCATCGGATGCTG 448260 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG----GGTGTCAATTTATTC 40087 | || ||||| | || || || || || || ||| | ||| | |||||| Sbjct 448259 CGAAGAATGCGAGAACGTGGGAGATGAAGTAACGCTCGTCGTCATTGAGTCTA-TTATTC 448201 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 || || | | ||| ||||| | ||| | ||||| || ||||| || || ||||||||| Sbjct 448200 CAATCGTGAAGATCCTTTGACAAATCAATCTCTTCTGCGGTCCAGAAAGAGGCCTCTGCC 448141 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 448140 TTCTTGTACATCTGCCAGAT 448121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906086710240