Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotium_20cepivorum_20[genbank_20GCA_5F002162485.1_202017-05-31] 316 sequences; 56,334,999 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36 257 2e-63 seq9 107 2e-18 seq21 93.3 5e-14 >seq36 Length=569963 Score = 257 bits (284), Expect = 2e-63 Identities = 1166/1814 (64%), Gaps = 61/1814 (3%) Strand=Plus/Minus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 ||||||||| |||||||| | || ||||||| | | ||||||||| | || ||| Sbjct 132065 ATAGTACATTCCGGTCTTCAAACCCAATTTCCATCCAGCAAAATGCATAGATGTGATCTT 132006 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| | |||| | |||||| |||| ||| || || || || Sbjct 132005 GCCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAATGCACC 131946 Query 110488 CCGTTGTGCCGCCATATCAATGACA--TCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || | || ||||| | || | || || | |||||||||||| || || Sbjct 131945 ACGATCAGCAGCCATTTGAACAATTGTTCGTTGAGA--AATTTCCCAAACAGTCTTGTAA 131888 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 || ||||| ||| |||| || | | ||| || || || || || || | | Sbjct 131887 AGGGCTTTGATGTCAGCTGGAATGTTGGGGATGTTTTGAATCGATCCACCATCGGCAATG 131828 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 || | | |||||| | | ||||||||||| || | | ||||| |||| ||| Sbjct 131827 ATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCCACAAGGTCTTTGAGGAGCCAT 131768 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 ||| |||| || || || || || | | ||||||||||| || ||| Sbjct 131767 GGGTTAACAACTTGGAATTCTCCAGCTAGAACACGACGTGAGTAGATGTTTGAAGTATAT 131708 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 ||||| || ||||| || ||| | |||||||| || || || ||||| ||||| Sbjct 131707 GGTTCGAAACATTCGTTGAAACCGAGGATTTGTGAAGTACTAGCAGTAGGCATAGGTGCA 131648 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | | ||| ||| |||| || | | ||||||| || ||| | | ||||| || Sbjct 131647 ACGAGAAGGGAGTTGCGAATTCCGTGTTGCTTGATGGATTGCTTCAAAGAGTCCCAATCC 131588 Query 110846 TAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGC 110901 | | || || | | ||||||||||| | || || | ||||||| ||| Sbjct 131587 CACAAATCAGAAGGGGTGACGC--CCCACATGTCATATTGGAGTTCACCCTTGGAGACTG 131530 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCT 110960 ||||| || | | ||||||| || | || | | | || | || |||| | | Sbjct 131529 GGGAG--CCTTGATAGGTTTCGTACGGGCCAAGTTCCTTTGCAATCTCGACAGATGAGGT 131472 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 | ||| | ||||| || ||||| || || || | || | | ||||||||| | Sbjct 131471 CAAGGCA-GCGTGGTAAATGGTCTCGAAAATCTGGATGTTGAGGTGCTTGGCTTCTGGCG 131413 Query 111021 AATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 ||||||||| | || | | | || ||| |||| || |||||||||||||| | | | Sbjct 131412 AATCAAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCAACAGC 131355 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 ||||||| ||| || | ||| ||||| || | || |||||| | || | || Sbjct 131354 GATAGGTCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGTACTGGATAATAGTTGATATC 131295 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAGTTTTTCATAAT 111197 ||||| ||| | ||| | |||| ||| | || || ||||| |||| ||| Sbjct 131294 AATGATCTTGTTCAAGTTTCTAACGACAA-CTTGGACGACCTCGTGAAGCTTTTGGAAAT 131236 Query 111198 CAAAAGTGCGAGTCTC-TTCAT--TGACATACTTTGGAAGGGCGATTGATGCCAAATTGC 111254 || |||| | ||| ||||| |||| | |||| || || ||||| ||||| || | Sbjct 131235 CATAAGTTCC---CTCATTCATGTTGACGAAAGTTGGTAGAGCAATTGAAGCCAAGTTAC 131179 Query 111255 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCT 111314 | ||| |||||| | | |||||| | || ||||| || |||||||| || Sbjct 131178 AGCAAGCAACCTCATCTGGTGCAGAGTACTCAACGATCTCTGTGCACAAGTTGGAGCTGC 131119 Query 111315 TAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGT 111374 ||| || || | ||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 131118 GAATAGTACCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGA 131059 Query 111375 AGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGG 111432 | || | || ||||| || || | | ||||||| | ||||| | | | | | || Sbjct 131058 AAGGATTTCCGGTCTCGGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGAGCCTTGA 130999 Query 111433 TACAATGGCGTTGGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 || | || | ||| | ||| || || || | |||||| || || ||||||| Sbjct 130998 TAGTCTTGC---GACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGAGCCTCGAACTCCT 130942 Query 111492 CACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 111550 | || | || | | ||| || || || | || || | ||||| ||||| ||| Sbjct 130941 CGCCATAAACATCTGCCAAACCAGG-GCATTCATTGGGGCACATAAGAGTCCATTCTCCA 130883 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 | ||||| ||||||||||| | || |||||||||| || | |||||||| | Sbjct 130882 TTCTTTTCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAAGAGATCGCGC 130823 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| | ||||| | ||| ||||| |||| ||||| ||||| | | ||| || Sbjct 130822 GCACGAACTTCTTCCTTACCGTGGTTTTTGCGTAGATCAAGAAACTCGAAAACATCGGCA 130763 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 111726 |||||||||||||| || || || | | || | || | ||| |||||| || Sbjct 130762 TGCCATGGCTCAAGGTAAACAGCAAACGCACCAGGACGTTTG-TTACCACCTTGATCAAC 130704 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||| | || ||| ||| || || |||||||| |||| |||||||| || | || || Sbjct 130703 ATATCTGGCAGTGTTGTTGAAAACTCGAAGCATGGGAACAATACCATTGGAATTTCCGTT 130644 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGCAT------CCC 111837 || || | ||| ||| || | | || ||| |||| || || Sbjct 130643 GGTACC-------GGCGATGTAT--GCACCAGTAGCACGGATTCTGTGAATGTTGAGACC 130593 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 |||||| || || ||||||||| ||||| | | | ||| | |||||||| | Sbjct 130592 AATACCACCGGCATTCTTTGAGATCATGGCACAAATCTTCAAAGTATCGTAGATACCATC 130533 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || ||||||||| || |||| ||||||||| || | || | | ||| ||||| Sbjct 130532 AATACTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGAAAGTTGTGCTTGTGGAGTACC 130473 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATG 112016 ||| ||||| ||||| | || || | || ||| | | |||||| || ||||| Sbjct 130472 CGCAGAAAAGAGTGTTGGGGAAGCATGTGT-AAAGTACTTGTTTGACATCAAGTTGTATG 130414 Query 112017 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 | || | || || || || || ||||| || || | || || ||||||| ||| | Sbjct 130413 TTTCGATAGCACTTTCGATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTT 130354 Query 112077 ACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTT 112135 || || |||| | ||||||| || ||| |||||| | || ||||||||| Sbjct 130353 GTTGAGGACGTTCCGCAACTTTGCCATCAAGACGTAAAAGATATGATC-GCTCAAGGGTC 130295 Query 112136 TTGAGACCAAAGTA 112149 || | || ||||| Sbjct 130294 TTAAATCCGAAGTA 130281 >seq9 Length=1448665 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||| || || ||||| || ||||| || |||||| || || | ||||||||| Sbjct 448716 GTGGAGACCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCAGCCATGAGACC 448657 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| || || ||||||||||||||||| ||| Sbjct 448656 ACGCTTCTTGAGCCAGAAGATGGATGCGAAAGATCCAGAGAAGAAGATACCCTCAACAGC 448597 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATTG 122848 || || |||| || |||| || |||| || | ||| | | || |||||| | | Sbjct 448596 GGCGAATGCAACGAGACGTTGAGCAAAGGTAGAG-TTCTTGTCTTGAATCCATTTGACAG 448538 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||||| ||| || || || Sbjct 448537 CCCAGTCGGCCTTCTTCTTAATGCAAGGAAC 448507 >seq21 Length=916854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || | || ||||| ||||||||||| || ||| ||| | |||||| | Sbjct 281363 ATGGCCGCATCGCCCCACGTTCCGGTCTCGCCTCCAAACATATGATTGATACTGGTGCCG 281304 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || || | || |||| ||| |||| ||||| | ||||| || ||||| || | Sbjct 281303 GTGTAATCGACGCTGATTATAGGGGTCAAGTAAAAGTACTCCTCTTTAACCACGGCGAAA 281244 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGCTGTGAAA 164784 | || | |||||| ||| | || ||||| | ||||| | | | ||| | | | | Sbjct 281243 AGGATTATGAGGTGAAGGAGGGCGATCGTGTTGCACAGTTGATTTTGGAGAGGATTTATA 281184 Query 164785 CACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGTGGATTTG 164844 |||| || || |||| | ||| | ||||||| | ||| |||| ||| || |||| Sbjct 281183 CACCTGAGGTCACGGAAGTCTTGGTTTTGGAAGAGAGTGCGAGGGGTGAGGGGGGTTTTG 281124 Query 164845 GATCTACTGGT 164855 || ||||||| Sbjct 281123 GAAGTACTGGT 281113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029519273600